from_h5ad: Copy trajectory from h5ad

In dynverse/dynio:

Description

Copy trajectory from h5ad

Usage

from_h5ad(
  anndata,
  layer_name = NULL,
  trajectory_prefix = "traj_",
  dimred_name = "dimred",
  grouping_name = "cluster",
  fimp_name = "importance"
)

Arguments

anndata	AnnData object
layer_name	A layer name to read. If 'NULL', will use 'ad$X'.
trajectory_prefix	The prefix of a trajectory to read.
dimred_name	A dimred to read, a matrix in 'ad$obsm'.
grouping_name	A grouping to read, a column in 'ad$obs'.
fimp_name	A feature importance to read, a column in 'ad$var'.

dynverse/dynio documentation built on Dec. 20, 2021, 2:19 a.m.