from_h5ad: Copy trajectory from h5ad

Description Usage Arguments

View source: R/from_h5ad.R

Description

Copy trajectory from h5ad

Usage

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from_h5ad(
  anndata,
  layer_name = NULL,
  trajectory_prefix = "traj_",
  dimred_name = "dimred",
  grouping_name = "cluster",
  fimp_name = "importance"
)

Arguments

anndata

AnnData object

layer_name

A layer name to read. If 'NULL', will use 'ad$X'.

trajectory_prefix

The prefix of a trajectory to read.

dimred_name

A dimred to read, a matrix in 'ad$obsm'.

grouping_name

A grouping to read, a column in 'ad$obs'.

fimp_name

A feature importance to read, a column in 'ad$var'.


dynverse/dynio documentation built on Dec. 20, 2021, 2:19 a.m.