ae2bioc converts local MAGE-TAB files into a AffyBatch, an
ExpressionSet or a NChannelSet.
A list as given from
by default, the columns are automatically selected according to the scanner type. If the scanner is unknown or if the user wants to use different columns than the default, the argument 'dataCols' can be set. For two colour arrays it must be a list with the fields 'R', 'G', 'Rb' and 'Gb' giving the column names to be used for red and green foreground and background. For one colour arrays, it must be a character string with the column name to be used. These column names must correspond to existing column names of the expression files.
if TRUE and only one platform in series, the platform name will be dropped.
An object of class
NChannelSet with the raw expression
values in the 'assayData' of the object, the information
contained in the sdrf file in the 'phenoData', the adf file content in
the 'featureData' and the idf file content in the 'experimentData'.
If several array designs are used in the dataset, the output is a list with an object for each array design.
# An example can be found in the help of the getAE function.
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