processTestPlot: Process a plot's test data

In ecology-rocks/SortieIO: Convert SORTIE-ND Summary Output Files To Human-Readable Formats

Description

Process a plot's test data

Usage

processTestPlot(plotname, sdir, yearoffset, charactername = "",
  writeimage = NULL, writefile = NULL, byspecies = F, numsubplots = 1,
  subplotid = 0, testSim = F, combineAdults = T)

Arguments

plotname	The name of the plot. This must be the same as what is looked up by realPlot, or it will bounce back.
sdir	The directory location of the output files
yearoffset	If there's a run-up – early data you want to throw out – add it here. Default is 0.
charactername	The character name to analyze. Current options are "SdlAbsDen", "SaplAbsDen", "AdultAbsDen", "SaplAbsBA", and "AdultAbsBA"
writeimage	Pass a filename in to allow the program to generate a plot and write it to file.
writefile	Pass a filename in to allow the program to generate a CSV and write it to file.
byspecies	If you want to separate the data by plot, set this to FALSE.
numsubplots	The number of subplots in the file. It defaults to 1, the entire plot "subplot"
subplotid	The subplot you want to analyze. Default ID is 0, for the entire plot.
testSim	A testing function, if set to true, the execution will stop and return the simulated data instead of the full result.
combineAdults	Defaults to true, if false, Adult analyses will exclude sapling and seedling counts and basal areas.

ecology-rocks/SortieIO documentation built on May 15, 2019, 7:57 p.m.