A repository for analyzing circadian data
monitor <- read_trikinetics()
monitor_downsampled <- downsample_time_series(monitor[-2], amount = 1, units = "hour", method = "sum")
monitor_processed <- multivariate_process_timeseries( df = monitor_downsampled, sampling_rate = '1 hour', window_size_in_days =3, window_step_in_days = 1, detrend_data = TRUE, butterworth = TRUE, f_low=1/4, f_high=0, plot = TRUE )
monitor_analysis <- multivariate_rythm_analysis( monitor_processed, sampling_rate = "1 hour", alpha=0.000000001, autocorrelation = TRUE, lomb_scargle = TRUE, from = 16, to = 32, ofac =60)
export_all(raw_data = monitor_downsampled, processed_data = monitor_processed, rythm_analysis_data = monitor_analysis, autocorrelation = TRUE, new_dir_name = "Monitor_40")
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