Man pages for edpclau/circadian-dynamics
Period and Rythm Analysis of Timeseries Data
| acf_window | Auto Correlation with a moving window |
| actogram | Actogram |
| analyze_timeseries.acf | Auto Correlation with a moving window |
| analyze_timeseries.cosinor | Cosinor Analysis |
| analyze_timeseries.grangertest | Apply the Granger Causality test on both directions |
| analyze_timeseries.lomb | Lomb Scargle Periodogram by window |
| arbitrary_noise_subtraction | Subtract Arbitrarily Chosen Noise Level from the Data |
| average_of_group | Create a timeseries mean based on all the samples in the data |
| bind_processed | Bind Rows of Processed and Analyzed data |
| butterworth_filter | Butterworth Filter Helper |
| butterworth_filter_2 | Butterworth Filter Helper |
| cosinor_lm | Cosinor Analysis |
| crop_data | Crop data to specific dates |
| data_export | Format Data for Export |
| define_event | Define an Event for the USDA RFID data |
| detailed_plots | Generate Detailed Plots (Utility function) |
| downsample_time_series | Downsample a timeseries with a datetime object |
| downsample_time_series_2 | Downsample a timeseries with a datetime object |
| export_all | Export plots and data outputed by the package |
| export_data | Export data |
| export_plots | Draw and Export plots from the analysis |
| export_plots_multivariate | Export plots |
| find_gaps | Fill Gaps in the data |
| generate_plots_no_windows | Function to Generate Plots of the Analyzed Data Must be used... |
| generate_plots_with_windows | Function to Generate Plots of the Analyzed Data Must be used... |
| lsp_by_window | Lomb Scargle Periodogram by window |
| lsp_mod | Lomb-Scargle Periodogram |
| lsp_peaks | Find peaks in an lsp object |
| make_time_windows | Create iterable time windows |
| make_time_windows_2 | Create iterable time windows |
| multivariate_process_timeseries | Helper function to prepare raw data for analysis |
| multivariate_rythm_analysis | Helper function to analyze the period of a time series |
| overplot_actogram | Export/Plot Actogram with Temperature |
| plot_acf_results | Plot Raw Values |
| plot_actogram | Export/Plot Actogram |
| plot_actogram2 | Plot Actograms |
| plot_actogram_windows | Plot Window Actogram |
| plot_autocorrelation | Plot the Autocorrelation by windows |
| plot_lsp_results | Plot Lomb-Scargle Results |
| plot_phase | Phase plots for all individuals |
| plot_raw_values | Plot Raw Values |
| plot_summarized_data | Plot a sumarrized version of the Rythm data found by... |
| plot_window_data | Utility Function for Plotting Detaiiled data in Windows |
| plot_window_data_app | Utility Function for Plotting Detaiiled data in Windows for... |
| process_timeseries | Helper function to prepare raw data for analysis |
| process_timeseries.rmv_gaps | Helper function to prepare raw data for analysis |
| read_clocklab | Import data from Clocklab |
| read_csv_data | Import data from a Trikinetics tsv |
| read_satellite | Import Weather data From satellite |
| read_trikinetics | Import data from a Trikinetics tsv |
| read_trikinetics_2 | Import data from a Trikinetics tsv |
| read_vitalpatch | Read a Folder of Vital Patch Data |
| rescale | Rescale the data from 0 to 1. |
| rm_inactive | Remove Inactive Individuals |
| rm_inactive_dates | Managing Inactive Variables |
| rythm_analysis_by_window | Helper function to analyze the period of a time series |
| rythm_analysis_by_window_2 | Helper function to analyze the period of a time series |
| shiny_plot_window_data | Utility Function for Plotting Detaiiled data by Window in the... |
| simplify_data | Simplify Data |
| smooth_and_detrend | Smooth and/or Detrend Data by Windows |
| smooth_detrend_by_windows | Smooth and/or Detrend Data by Windows |
