Man pages for edwardslee/alphabetr
Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells

bagpipeIdentify candidate alpha/beta pairs.
chain_scoresCalculate association scores between alpha and beta chain...
combine_freq_resultsCombines the frequency estimation results from single TCR...
create_clonesCreate a synthetic set of clones with a specific underlying...
create_dataSimulate sequencing data obtained from the alphabetr approach...
create_data_singlecellsSimulate sequencing data obtained single-cell sequencing
dual_discrim_dual_likelihoodCalculate likelihood of two beta-sharing candidate alpha-beta...
dual_discrim_shared_likelihoodCalculate likelihood of two beta-sharing candidate alpha-beta...
dual_evalCalculate dual depths and false dual rates for simulated...
dual_tailDiscriminate between beta-sharing clones and dual-alpha TCR...
dual_topDiscriminate between beta-sharing clones and dual-alpha TCR...
freq_estimateEstimation of frequencies of clones identified by 'alphabetr'
freq_evalCalculate the precision, CV, and accuracy of frequency...
likelihood_dualCalculate likelihood curve of frequency estimates for a...
likelihood_dualdualCalculate likelihood curve of frequency estimates for a...
likelihood_singleCalculate likelihood curve of frequency estimates for a...
read_alphabetrRead in alphabetr sequencing data into the binary matrix form...
edwardslee/alphabetr documentation built on May 13, 2017, 2:04 p.m.