Description Usage Arguments Value

`dual_discrim_shared_likelihood()`

is used within `dual_top`

to calculate the likelihood that two alpha-beta pairs identified by
`bagpipe`

sharing the same beta chain derive from a two
distinct clones sharing the same beta chain dual-alpha clone (instead of
a single dual-alpha clone)

1 2 | ```
dual_discrim_shared_likelihood(est1, est2, err, numb_cells, numb_wells,
binomials, multinomials)
``` |

`est1` |
Frequency estimate of the first alpha-beta clone |

`est2` |
Frequency estimate of the second alpha-beta clone |

`err` |
Mean drop error rate |

`numb_cells` |
Vector containing the number of cells per well |

`numb_wells` |
Vector containing the number of wells with the sample
sizes given by |

`binomials` |
Calculations of the needed binomial coefficients; this is faster in R than in Rcpp (from my own tests) |

`multinomials` |
Calculations of the needed multinomial coefficients; this is way faster in R due to vectorization |

A numeric containing the negative log likelihood

edwardslee/alphabetr documentation built on May 13, 2017, 2:04 p.m.

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