dplot3_graphjs: Plot network using 'threejs::graphjs'
In egenn/rtemis: Machine Learning and Visualization

dplot3_graphjs

R Documentation

Plot network using threejs::graphjs

Description

Interactive plotting of an igraph net using threejs

Usage

dplot3_graphjs(
  net,
  vertex.size = 1,
  vertex.col = NULL,
  vertex.label.col = NULL,
  vertex.label.alpha = 0.66,
  vertex.frame.col = NA,
  vertex.label = NULL,
  vertex.shape = "circle",
  edge.col = NULL,
  edge.alpha = 0.5,
  edge.curved = 0.35,
  edge.width = 2,
  layout = c("fr", "dh", "drl", "gem", "graphopt", "kk", "lgl", "mds", "sugiyama"),
  coords = NULL,
  layout_params = list(),
  cluster = NULL,
  groups = NULL,
  cluster_params = list(),
  cluster_mark_groups = TRUE,
  cluster_color_vertices = FALSE,
  main = "",
  theme = rtTheme,
  theme_extra_args = list(),
  palette = rtPalette,
  mar = rep(0, 4),
  par.reset = TRUE,
  filename = NULL,
  verbose = TRUE,
  ...
)

Arguments

`net`	`igraph` network
`vertex.size`	Numeric: Vertex size
`vertex.col`	Color for vertices
`vertex.label.col`	Color for vertex labels
`vertex.label.alpha`	Numeric: transparency for `vertex.label.col`
`vertex.frame.col`	Color for vertex border (frame)
`vertex.label`	Character vector: Vertex labels. Default = NULL, which will keep existing names in `net` if any. Set to NA to avoid printing vertex labels
`vertex.shape`	Character, vector, length 1 or N nodes: Vertex shape. See `graphjs("vertex.shape")`. Default = "circle"
`edge.col`	Color for edges
`edge.alpha`	Numeric: Transparency for edges
`edge.curved`	Numeric: Curvature of edges. Default = .35
`edge.width`	Numeric: Edge thickness
`layout`	Character: one of: "fr", "dh", "drl", "gem", "graphopt", "kk", "lgl", "mds", "sugiyama", corresponding to all the available layouts in igraph
`coords`	Output of precomputed igraph layout. If provided, `layout` is ignored
`layout_params`	List of parameters to pass to `layout` function
`cluster`	Character: one of: "edge_betweenness", "fast_greedy", "infomap", "label_prop", "leading_eigen", "louvain", "optimal", "spinglass", "walktrap", corresponding to all the available igraph clustering functions
`groups`	Output of precomputed igraph clustering. If provided, `cluster` is ignored
`cluster_params`	List of parameters to pass to `cluster` function
`cluster_mark_groups`	Logical: If TRUE, draw polygons to indicate clusters, if `groups` or `cluster` defined
`cluster_color_vertices`	Logical: If TRUE, color vertices by cluster membership
`main`	Character: main title
`theme`	rtemis theme to use
`theme_extra_args`	List of extra arguments to pass to the theme function defined by `theme`. This argument is used when the extra args (...) are passed the plotting function, in this case `igraph::plot.igraph` and not to the theme function
`palette`	Color vector or name of rtemis palette
`mar`	Numeric vector, length 4: `par`'s margin argument
`par.reset`	Logical: If TRUE, reset par before exiting. Default = TRUE
`filename`	Character: If provided, save plot to this filepath
`verbose`	Logical, If TRUE, print messages to console. Default = TRUE
`...`	Extra arguments to pass to `igraph::plot.igraph()`