dplot3_xyz: Interactive 3D Plots

In egenn/rtemis: Machine Learning and Visualization

Interactive 3D Plots

Description

Draw interactive 3D plots using plotly

Usage

dplot3_xyz(
  x,
  y = NULL,
  z = NULL,
  fit = NULL,
  cluster = NULL,
  cluster.params = list(k = 2),
  group = NULL,
  formula = NULL,
  rsq = TRUE,
  mode = "markers",
  order.on.x = NULL,
  main = NULL,
  xlab = NULL,
  ylab = NULL,
  zlab = NULL,
  col = NULL,
  alpha = 0.8,
  bg = NULL,
  plot.bg = NULL,
  theme = rtTheme,
  palette = rtPalette,
  axes.square = FALSE,
  group.names = NULL,
  font.size = 16,
  marker.col = NULL,
  marker.size = 8,
  fit.col = NULL,
  fit.alpha = 0.7,
  fit.lwd = 2.5,
  tick.font.size = 12,
  spike.col = NULL,
  legend = NULL,
  legend.xy = c(0, 1),
  legend.xanchor = "left",
  legend.yanchor = "auto",
  legend.orientation = "v",
  legend.col = NULL,
  legend.bg = "#FFFFFF00",
  legend.border.col = "#FFFFFF00",
  legend.borderwidth = 0,
  legend.group.gap = 0,
  margin = list(t = 30, b = 0, l = 0, r = 0),
  fit.params = list(),
  width = NULL,
  height = NULL,
  padding = 0,
  displayModeBar = TRUE,
  modeBar.file.format = "svg",
  trace = 0,
  filename = NULL,
  file.width = 500,
  file.height = 500,
  file.scale = 1,
  ...
)

Arguments

x	Numeric, vector/data.frame/list: x-axis data. If y is NULL and NCOL(x) > 1, first two columns used as x and y, respectively
y	Numeric, vector/data.frame/list: y-axis data
z	Numeric, vector/data.frame/list: z-axis data
fit	Character: rtemis model to calculate y ~ x fit. Options: see select_learn() Can also be Logical, which will give a GAM fit if TRUE. If you specify "NLA", the activation function should be passed as a string.
cluster	Character: Clusterer name. Will cluster data.frame(x, y) and pass result to group. Run select_clust for options
cluster.params	List: Names list of parameters to pass to the cluster function
group	Vector: Will be converted to factor; levels define group members. Default = NULL
formula	Formula: Provide a formula to be solved using s_NLS. If provided, fit is forced to 'nls'. e.g. y ~ b * m ^ x for a power curve. Note: nls is powerful but is prone to errors and warnings. Use single letters for parameter names, no numbers.
rsq	Logical: If TRUE, print R-squared values in legend if fit is set
mode	Character, vector: "markers", "lines", "markers+lines".
order.on.x	Logical: If TRUE, order x and y on x. Default = NULL, which becomes TRUE if mode includes lines.
main	Character: Main plot title.
xlab	Character: x-axis label.
ylab	Character: y-axis label.
zlab	Character: z-axis label
col	Color for markers. Default=NULL, which will draw colors from palette
alpha	Float (0, 1]: Transparency for bar colors. Default = .8
bg	Background color
plot.bg	Plot background color
theme	List or Character: Either the output of a ⁠theme_*()⁠ function or the name of a theme. Use themes() to get available theme names. Theme functions are of the form ⁠theme_<name>⁠.
palette	Character: Name of rtemis palette to use. Default = "rtCol1". Only used if col = NULL
axes.square	Logical: If TRUE: draw a square plot to fill the graphic device. Default = FALSE. Note: If TRUE, the device size at time of call is captured and height and width are set so as to draw the largest square available. This means that resizing the device window will not automatically resize the plot.
group.names	Character, vector, length = NROW(x): Group names. Default = NULL, which uses rownames(x)
font.size	Float: Font size for all labels. Default = 16
marker.col	Color for marker
marker.size	Numeric: Marker size.
fit.col	Color: Color of the fit line.
fit.alpha	Float [0, 1]: Transparency for fit line
fit.lwd	Float: Fit line width
tick.font.size	Numeric: Tick font size
spike.col	Spike lines color
legend	Logical: If TRUE, draw legend. Default = NULL, which will be set to TRUE if there are more than 1 groups, or fit is set
legend.xy	Numeric, vector, length 2: x and y for plotly's legend
legend.xanchor	Character: Legend's x anchor: "left", "center", "right", "auto"
legend.yanchor	Character: Legend's y anchor: "top", "middle", "bottom", "auto"
legend.orientation	"v" or "h" for vertical or horizontal
legend.col	Color: Legend text color. Default = NULL, determined by theme
legend.bg	Color: Background color for legend
legend.border.col	Color: Border color for legend
legend.borderwidth	Numeric: Border width for legend
legend.group.gap	Numeric: Gap between legend groups
margin	Numeric, named list: Margins for top, bottom, left, right. Default = ⁠list(t = 30, b = 0, l = 0, r = 0⁠
fit.params	List: Arguments for learner defined by fit. Default = NULL, i.e. use default learner parameters
width	Numeric: Force plot size to this width. Default = NULL, i.e. fill available space
height	Numeric: Force plot size to this height. Default = NULL, i.e. fill available space
padding	Numeric: Graph padding.
displayModeBar	Logical: If TRUE, show plotly's modebar
modeBar.file.format	Character: "svg", "png", "jpeg", "pdf" / any output file type supported by plotly and your system
trace	Integer: The height the number the more diagnostic info is printed to the console
filename	Character: Path to file to save static plot. Default = NULL
file.width	Integer: File width in pixels for when filename is set.
file.height	Integer: File height in pixels for when filename is set.
file.scale	Numeric: If saving to file, scale plot by this number
...	Additional arguments passed to theme

Details

Note that dplot3_xyz uses the theme's plot.bg as grid.col

Author(s)

E.D. Gennatas

Examples

## Not run: 
dplot3_xyz(iris, group = iris$Species, theme = "darkgrid")

## End(Not run)

egenn/rtemis documentation built on Oct. 28, 2024, 6:30 a.m.