plot.massGLM: Plot 'massGLM' object

In egenn/rtemis: Machine Learning and Visualization

Plot massGLM object

Description

Plots a massGLM object using dplot3_bar

Usage

## S3 method for class 'massGLM'
plot(
  x,
  predictor = NULL,
  main = NULL,
  what = c("volcano", "coefs", "pvals"),
  p.adjust.method = "holm",
  p.transform = function(x) -log10(x),
  show = c("all", "signif"),
  xnames = NULL,
  pval.hline = c(0.05, 0.001),
  hline.col = "#ffffff",
  hline.dash = "dash",
  hline.annotate = as.character(pval.hline),
  ylim = NULL,
  xlab = NULL,
  ylab = NULL,
  group = NULL,
  col.neg = "#43A4AC",
  col.pos = "#FA9860",
  col.ns = "#7f7f7f",
  theme = rtTheme,
  alpha = NULL,
  volcano.annotate = TRUE,
  volcano.annotate.n = 7,
  volcano.hline = NULL,
  volcano.hline.dash = "dot",
  volcano.hline.annotate = NULL,
  volcano.p.transform = function(x) -log10(x),
  margin = NULL,
  displayModeBar = TRUE,
  trace = 0,
  filename = NULL,
  ...
)

Arguments

x	massGLM object
what	Character: "adjusted" or "raw" p-values to plot
xlab	Character: x-axis label for volcano plot

Author(s)

E.D. Gennatas

egenn/rtemis documentation built on Nov. 22, 2024, 4:12 a.m.