coxtable: coxtable

In eheinzen/Ethan: A bunch of functions written by Ethan Heinzen

Description

Make a pretty cox model table.

Usage

coxtable(cox.model, rownames, caption.prefix = "", print.xtable = FALSE,
  digits = 2)

Arguments

cox.model	A cox object
rownames	(optional) The row names to put on the table; defaults to what summary() does. Must be a character vector
caption.prefix	(optional) A string to put in front of the caption. By default, the caption contains N, N_events, and N_missing.
print.xtable	If TRUE, prints the cox table created as an xtable object. If FALSE (the default), it simply returns the table.
digits	If print.xtable is TRUE, how many digits should each column have? Note that the p-value is automatically converted to scientific notation where appropriate.

Value

If print.xtable is FALSE, a table of cox model estimates, SEs, Z-scores, p-values, hazard ratios, and confidence intervals.

Examples

library(survival)
model <- coxph(Surv(time_to_fu, status_fu) ~ likes_pizza, data = pizza.data)
coxtable(model, "Likes Pizza", "Unadjusted Cox Model.", TRUE, 3)
model <- coxph(Surv(time_to_fu, status_fu) ~ likes_pizza + fav_flavor, data = pizza.data)
coxtable(model, c("Likes Pizza", "Pepperoni", "Sausage"), "Adjusted Cox Model.", TRUE, 3)

eheinzen/Ethan documentation built on May 3, 2019, 4:32 p.m.