msigdb_immunologic_signatures: Immunologic signatures

Description Usage Format References

Description

Gene sets that represent cell states and perturbations within the immune system. The signatures were generated by manual curation of published studies in human and mouse immunology. For each study, pairwise comparisons of relevant classes were made and genes ranked by mutual information. Gene sets correspond to top or bottom genes (FDR < 0.25 or maximum of 200 genes) for each comparison. This resource is generated as part of the Human Immunology Project Consortium (HIPC; http://www.immuneprofiling.org/). NOTE: Gene Symbols are updated by the upDateAnnoGMT.Rmd when it is run. Original is kept as orig_msigdb.

Usage

1

Format

A list of character of length 1910, with one element per module.

References

http://www.broadinstitute.org/gsea/msigdb/genesets.jsp?collection=C7


ehfhcrc/UpdateAnno documentation built on May 16, 2019, 12:16 a.m.