| AlexCosmicArtif_sigInd_df |
Man page
|
| AlexCosmicArtif_sig_df |
Man page
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| AlexCosmicValid_sigInd_df |
Man page
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| AlexCosmicValid_sig_df |
Man page
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| AlexInitialArtif_sigInd_df |
Man page
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| AlexInitialArtif_sig_df |
Man page
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| AlexInitialValid_sigInd_df |
Man page
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| AlexInitialValid_sig_df |
Man page
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| COSMIC_subgroups_df |
Man page
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| LCD |
Man page
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| LCD_complex_cutoff |
Man page
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| LCD_complex_cutoff_perPID |
Man page
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| YAPSA |
Man page
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| YAPSA-package |
Man page
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| add_annotation |
Man page
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| add_as_fist_to_list |
Man page
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| aggregate_exposures_by_category |
Man page
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| annotate_intermut_dist_PID |
Man page
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| annotate_intermut_dist_cohort |
Man page
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| annotation_exposures_barplot |
Man page
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| annotation_heatmap_exposures |
Man page
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| attribute_nucleotide_exchanges |
Man page
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| average_over_present |
Man page
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| build_gene_list_for_pathway |
Man page
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| chosen_AlexInitialArtif_sigInd_df |
Man page
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| chosen_signatures_indices_df |
Man page
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| compare_SMCs |
Man page
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| compare_exposures |
Man page
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| compare_sets |
Man page
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| compare_to_catalogues |
Man page
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| complex_heatmap_exposures |
Man page
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| compute_comparison_stat_df |
Man page
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| cosineDist |
Man page
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| create_mutation_catalogue_from_VR |
Man page
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| create_mutation_catalogue_from_df |
Man page
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| cut_breaks_as_intervals |
Man page
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| cutoffCosmicArtif_abs_df |
Man page
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| cutoffCosmicArtif_rel_df |
Man page
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| cutoffCosmicValid_abs_df |
Man page
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| cutoffCosmicValid_rel_df |
Man page
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| cutoffInitialArtif_abs_df |
Man page
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| cutoffInitialArtif_rel_df |
Man page
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| cutoffInitialValid_abs_df |
Man page
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| cutoffInitialValid_rel_df |
Man page
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| cutoffs |
Man page
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| exampleYAPSA |
Man page
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| exchange_colour_vector |
Man page
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| exposures_barplot |
Man page
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| extract_names_from_gene_list |
Man page
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| find_affected_PIDs |
Man page
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| get_extreme_PIDs |
Man page
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| hclust_exposures |
Man page
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| lymphoma_Nature2013_COSMIC_cutoff_exposures_df |
Man page
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| lymphoma_Nature2013_raw_df |
Man page
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| lymphoma_PID_df |
Man page
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| lymphoma_test_df |
Man page
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| makeVRangesFromDataFrame |
Man page
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| make_catalogue_strata_df |
Man page
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| make_comparison_matrix |
Man page
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| make_strata_df |
Man page
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| make_subgroups_df |
Man page
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| melt_exposures |
Man page
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| merge_exposures |
Man page
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| normalizeMotifs_otherRownames |
Man page
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| normalize_df_per_dim |
Man page
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| plotExchangeSpectra |
Man page
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| plot_SMC |
Man page
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| plot_exposures |
Man page
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| plot_relative_exposures |
Man page
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| plot_strata |
Man page
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| rel_lymphoma_Nature2013_COSMIC_cutoff_exposures_df |
Man page
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| repeat_df |
Man page
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| run_SMC |
Man page
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| run_annotate_vcf_pl |
Man page
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| run_comparison_catalogues |
Man page
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| run_comparison_general |
Man page
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| run_kmer_frequency_correction |
Man page
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| run_kmer_frequency_normalization |
Man page
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| run_plot_strata_general |
Man page
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| sd_over_present |
Man page
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| shapiro_if_possible |
Man page
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| sigs |
Man page
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| split_exposures_by_subgroups |
Man page
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| stat_plot_subgroups |
Man page
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| stat_test_SMC |
Man page
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| stat_test_subgroups |
Man page
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| stderrmean |
Man page
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| stderrmean_over_present |
Man page
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| sum_over_list_of_df |
Man page
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| targetCapture_cor_factors |
Man page
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| test_exposureAffected |
Man page
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| test_gene_list_in_exposures |
Man page
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| transform_rownames_MATLAB_to_R |
Man page
|
| transform_rownames_R_to_MATLAB |
Man page
|
| transform_rownames_YAPSA_to_deconstructSigs |
Man page
|
| transform_rownames_deconstructSigs_to_YAPSA |
Man page
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| transform_rownames_nature_to_R |
Man page
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| translate_to_1kG |
Man page
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| translate_to_hg19 |
Man page
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| trellis_rainfall_plot |
Man page
|
