Man pages for elisabettasciacca/DEGGs
Differentially Expressed Gene-Gene pairs
| BRCA_metadata | TCGA Breast Invasive Carcinoma sample data |
| BRCA_normCounts | TCGA Breast Invasive Carcinoma (BRCA) normalised gene... |
| calc_pvalues_network | Calculate the pvalues for specific subgroup network samples |
| calc_pvalues_percentile | Compute interaction p values for a single percentile value |
| Deggs-class | An S4 class to define the deggs output |
| extract_sig_deggs | Output a table of all the significant gene-gene interactions... |
| generate_subnetworks | Generate subnetworks |
| node_boxplot | Boxplots of expression levels of single nodes (genes) per... |
| print_regressions | Plot regressions for a specific gene-gene interaction |
| tidy_metadata | Tidying up of the metadata table. Samples belonging to... |
| View_interactive_subnetwork | Interactive shiny app to visualise subnetworks |
