Files in elkebir-group/phydoser
Design a follow-up single-cell sequencing experiment from bulk sequencing data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/RcppExports.R
R/phydose-documentData.r
R/phydose-lpconf.R
R/phydose-mainfunctions.R
R/phydose-multinomialunion.R
R/phydose-package.R
R/phydose-plotting.r
R/phydose-readdata.r
R/phydose_reconcile.r
README.md
README.rmd
data/ALLPatient2.rda
data/ALLPatient2DFF.rda
data/AML38.rda
data/AML38DFF.rda
data/multsample.rda
data/phydata.rda
data/phydataDFF.rda
inst/extdata/AML38.txt
inst/extdata/example.txt
inst/extdata/multsample.txt
man/AML38.Rd
man/AML38DFF.Rd
man/CalcU.Rd
man/CreateDOT.Rd
man/ReadJoint.Rd
man/ReadJointDir.Rd
man/ReadTrees.Rd
man/Reconcile.Rd
man/dot-CleanFmatrix.Rd
man/dot-CreateF.Rd
man/dot-CreateGraphDot.Rd
man/dot-CreateKey.Rd
man/dot-CreateParentList.Rd
man/dot-CreateTree.Rd
man/dot-GetAllF.Rd
man/dot-GetAllTrees.Rd
man/dot-SortMat.Rd
man/generateDistFeat.Rd
man/phydata.Rd
man/phydataDFF.Rd
man/phydose-package.Rd
man/phydose.Rd
man/plotTree.Rd
man/rcpp_hello_world.Rd
man/solveFLower.Rd
man/solveFUpper.Rd
src/EnumerateDF.cpp
src/RcppExports.cpp
tests/testthat.R
tests/testthat/test.generateDFF.R
vignettes/.gitignore
vignettes/bibliography.bib
vignettes/phydose-vignette.Rmd
