AML38: phydose tutorial dataset of a patient (AML-38) with acute...

In elkebir-group/phydoser: Design a follow-up single-cell sequencing experiment from bulk sequencing data

Description

phydose tutorial dataset of a patient (AML-38) with acute myeloid leukemia

Usage

AML38

Format

a list of four items:

trees

a list of 316 candidate set binary tree matrices with clones as rows and mutations as columns

fmatrices

a frequency matrix with samples as the rows and mutation frequencies as the columns

u_list

a list of 316 clonal prevalence matrices with samples as the rows and clones as the columns

graph

a list of 316 dot format strings for each respective tree in the candate set

Source

https://www.biorxiv.org/content/10.1101/2020.02.07.925743v1.abstract

elkebir-group/phydoser documentation built on July 16, 2020, 4:43 p.m.