dot-fit_surface: Fitting the map surface
In elldc/CellTrails: Reconstruction, visualization and analysis of branching trajectories
Description
Usage
Arguments
Value
Author(s)
Description
Fits the smooth surface of CellTrails maps
Usage
1
.fit_surface(X, y, npoints = 300, weights = NULL, knots = 10, rescale = FALSE)
Arguments
X
Ordination; numerical matrix
y
Expression values; numerical vector
npoints
Number of points along x and y axis
weights
Cluster states (defines weights based on fraction
of non-detects per state)
knots
Number of knots in spline function
Value
A list containing the following components:
fit
GAM fit object
grid
Fitted values
Author(s)
Daniel C. Ellwanger
elldc/CellTrails documentation built on May 16, 2020, 4:40 a.m.
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Description Usage Arguments Value Author(s)
Description
Fits the smooth surface of CellTrails maps
Usage
1 | .fit_surface(X, y, npoints = 300, weights = NULL, knots = 10, rescale = FALSE)
|
Arguments
X |
Ordination; numerical matrix |
y |
Expression values; numerical vector |
npoints |
Number of points along x and y axis |
weights |
Cluster states (defines weights based on fraction of non-detects per state) |
knots |
Number of knots in spline function |
Value
A list containing the following components:
|
GAM fit object |
|
Fitted values |
Author(s)
Daniel C. Ellwanger
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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