Files in elldc/CellTrails
Reconstruction, visualization and analysis of branching trajectories

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/AllClasses.R R/AllGenerics.R R/accessor-methods.R R/cluster-methods.R R/data-sets.R R/diffexp-methods.R R/dimred-methods.R R/export-methods.R R/filter-methods.R R/fitting-methods.R R/import-methods.R R/imputation-methods.R R/layout-methods.R R/plot-methods.R R/show-methods.R R/simulation-methods.R R/test-methods.R R/trajectory-methods.R R/utility-methods.R README.md
data/exSCE.rda
docs/index.Rmd
docs/index.html
inst/CITATION
inst/exdata/bundle.graphml
inst/exdata/bundle.rds
inst/exdata/exSCE.graphml
inst/exdata/th2.rds
inst/scripts/make-data.R inst/unitTests/test_addTrail.R inst/unitTests/test_connectStates.R inst/unitTests/test_embedSamples.R inst/unitTests/test_findSpectrum.R inst/unitTests/test_findStates.R inst/unitTests/test_fitDynamic.R inst/unitTests/test_fitTrajectory.R inst/unitTests/test_phenoNames.R inst/unitTests/test_plotDynamic.R inst/unitTests/test_plotManifold.R inst/unitTests/test_plotMap.R inst/unitTests/test_plotStateExpression.R inst/unitTests/test_plotStateSize.R inst/unitTests/test_plotStateTrajectory.R inst/unitTests/test_plotTrail.R inst/unitTests/test_plotTrajectoryFit.R inst/unitTests/test_userLandmarks.R inst/unitTests/test_workflow_logic.R man/addTrail.Rd man/connectStates.Rd man/contrastTrailExpr.Rd man/embedSamples.Rd man/enrichment.test.Rd man/exSCE.Rd man/featureNames-SingleCellExperiment-method.Rd man/filterTrajFeaturesByCOV.Rd man/filterTrajFeaturesByDL.Rd man/filterTrajFeaturesByFF.Rd man/findSpectrum.Rd man/findStates.Rd man/fitDynamic.Rd man/fitTrajectory.Rd man/landmarks.Rd man/latentSpace-set.Rd man/latentSpace.Rd man/manifold2D-set.Rd man/manifold2D.Rd man/pca.Rd man/phenoNames.Rd man/plotDynamic.Rd man/plotManifold.Rd man/plotMap.Rd man/plotStateExpression.Rd man/plotStateSize.Rd man/plotStateTrajectory.Rd man/plotTrail.Rd man/plotTrajectoryFit.Rd man/read.ygraphml.Rd man/removeTrail.Rd man/sampleNames-SingleCellExperiment-method.Rd man/selectTrajectory.Rd man/showTrajInfo.Rd man/simulate_exprs.Rd man/stateTrajLayout-set.Rd man/states-set.Rd man/states.Rd man/trailNames-set.Rd man/trailNames.Rd man/trails.Rd man/trajComponents.Rd man/trajFeatureNames-set.Rd man/trajFeatureNames.Rd man/trajLayout-set.Rd man/trajLayout.Rd man/trajResiduals.Rd man/trajSampleNames.Rd man/userLandmarks-set.Rd man/userLandmarks.Rd man/write.ygraphml.Rd tests/runTests.R vignettes/vignette.Rmd
elldc/CellTrails documentation built on Aug. 16, 2018, 3:50 a.m.