qtl_dataframe: Concatenate data tables on genotypes and phenotypes into a...

In ellisztamas/arghqtl: Tools for plotting and downstream analysis of R/QTL objects in R

Description

Match datatables for phenotypes and genotypes for a set of lines, and combine these into a single dataframe that r/qtl can read.

Usage

qtl_dataframe(
  phenotypes,
  genotypes,
  phenotype_id_column = 1,
  genotype_id_column = 1
)

Arguments

phenotypes	A table of phenotype data.
genotypes	A table of genotype data, including marker information in the first two rows.
phenotype_id_column	The column in phenotype indicating line names.
genotype_id_column	The column in genotype indicating line names to match up with those for the phenotype table.

Value

# a dataframe of the format for importing into R/qtl.

ellisztamas/arghqtl documentation built on March 18, 2021, 9:44 p.m.