LoadDB: LoadDB

In elmerfer/CNVR: This package is a wrapper to ExomeDepth package in order to facilitate the processign of Exome data for oncogenomics and presicion medicine

LoadDB

Description

LoadDB

Usage

LoadDB(path)

Arguments

path	a path directory to the DB

Value

an object of class CNVRdb, derived from a list with the following slots It should hold the following slots: DB : (data.matrix) the exon counts data matrix of the reference subjects (ExS) exons : (data.frame) annotation information chromosome, start, end , strand , ... path : (character) full path where the library is saved GenomeDBversion : the genome DB version (see GetGenome) (all the samples should be processed by the same GenomeDBversion) Aligner : the used aligner (all the samples should be processed by the same Aligner)

elmerfer/CNVR documentation built on July 8, 2022, 6:23 p.m.