dot-ReadBamHeader: .ReadBamHeader
In elmerfer/CNVR: This package is a wrapper to ExomeDepth package in order to facilitate the processign of Exome data for oncogenomics and presicion medicine
.ReadBamHeader R Documentation
.ReadBamHeader
Description
.ReadBamHeader
Usage
.ReadBamHeader(bamFile)
Arguments
bamFile
bam file full path
Value
a list with the following slots:
CHR: the list of chromosomes and sequence names in the bam file
ProgramName : the alignment program (PG:PN see [BAM header](https://samtools.github.io/hts-specs/SAMv1.pdf))
ProgramVersion : the version of the aligner
Code : executed source line code
GenomeDBversion : the genome version used (see GenomeDB)
GenomeDBpath : the path to genome version
elmerfer/CNVR documentation built on July 8, 2022, 6:23 p.m.
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| .ReadBamHeader | R Documentation |
.ReadBamHeader
Description
.ReadBamHeader
Usage
.ReadBamHeader(bamFile)
Arguments
bamFile |
bam file full path |
Value
a list with the following slots: CHR: the list of chromosomes and sequence names in the bam file ProgramName : the alignment program (PG:PN see [BAM header](https://samtools.github.io/hts-specs/SAMv1.pdf)) ProgramVersion : the version of the aligner Code : executed source line code GenomeDBversion : the genome version used (see GenomeDB) GenomeDBpath : the path to genome version
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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