GetGenomesInDB: GetGenomesInDB return the available genomes in the Database

In elmerfer/GenomeDB: it will storage genomes and annotation files

GetGenomesInDB return the available genomes in the Database

Description

GetGenomesInDB return the available genomes in the Database

Usage

genome.list <- GetGenomesInDB()

Value

It returns a named nested list of the available genomes per species. Inside each species slots, an slot named "main" with the main path and an slot named "version" : a named vector with each genome-annotation directory

Examples

## Not run: 
genome.list <- GetGenomesInDB()
genome.list
$Human
$Human$main
[1] "/media/respaldo4t/GenomesDB/Human"

GRCh38+GENECODE                                                     GRCh37+GENECODE19
"/media/respaldo4t/GenomesDB/Human/GRCh38+GENECODE"                 "/media/respaldo4t/GenomesDB/Human/GRCh37+GENECODE19"
<NA>
  "/media/respaldo4t/GenomesDB/Human/GRCh38+GENECODE/GRCh37+GENECODE19"

## End(Not run)

elmerfer/GenomeDB documentation built on March 1, 2023, 1:11 a.m.