README.md
In elmerfer/RMiXCR: An easy wrapper for MiXCR software
RMiXCR
The RMiXCR package is user friendly R interface to diminish the required bioinformatic skills for using the MiXCR software in the TCR recognition.
It is mainly focused in their use in the analysis of RNAseq bulk samples, facilitating its installation and usability by minimizing the inputs parameters, thus providing transparency and reproducibility of the results.
Package Installation
install.packages("devtools")
devtools::install_github("elmerfer/RMiXCR")
MiXCR installation
You can install RMiXCR in your favorite directory "the/path". After installation, you will see in your file structire the following file path directory "the/path/RMiXCR""
library(RMiXCR)
InstallMiXCR(where = "the/path")
Capabilities
It will provide
easy installation of MiXCR software
Transparent RNAseq analysis for TCR from V, D, J genes rearrangements.
Couple with R data structures to facilitate its analysis
Improved export capabilities to Excel(r) files
* Analitical capabilities in estimation diversity, gene usage an several new statistical capabilities
Developers
- Elmer A. Fernàndez. (PhD), main author and idea. FPM - CONICET.
- Guadalupe Nibeyro. developer
- Veronica Baronetto developer and analitical tools.
elmerfer/RMiXCR documentation built on May 27, 2023, 5:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
RMiXCR
The RMiXCR package is user friendly R interface to diminish the required bioinformatic skills for using the MiXCR software in the TCR recognition. It is mainly focused in their use in the analysis of RNAseq bulk samples, facilitating its installation and usability by minimizing the inputs parameters, thus providing transparency and reproducibility of the results.
Package Installation
install.packages("devtools")
devtools::install_github("elmerfer/RMiXCR")
MiXCR installation
You can install RMiXCR in your favorite directory "the/path". After installation, you will see in your file structire the following file path directory "the/path/RMiXCR""
library(RMiXCR)
InstallMiXCR(where = "the/path")
Capabilities
It will provide easy installation of MiXCR software Transparent RNAseq analysis for TCR from V, D, J genes rearrangements. Couple with R data structures to facilitate its analysis Improved export capabilities to Excel(r) files * Analitical capabilities in estimation diversity, gene usage an several new statistical capabilities
Developers
- Elmer A. Fernàndez. (PhD), main author and idea. FPM - CONICET.
- Guadalupe Nibeyro. developer
- Veronica Baronetto developer and analitical tools.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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