RunMiXCRseqClones: RunMiXCRseqClones
In elmerfer/RMiXCR: An easy wrapper for MiXCR software
View source: R/RMiXCR_runners.R
RunMiXCRseqClones R Documentation
RunMiXCRseqClones
Description
The assemble command builds clonotypes from alignments obtained with RunMiXCR or
RunMiXCRseqAligment. Clonotypes assembly is performed for a chosen assembling feature (e.g. CDR3 by default).
Usage
RunMiXCRseqClones(alignmentFile, nThreads = 4L)
Arguments
alignmentFile
the full path name of the vdja file returned by RunMiXCRseqAligment
nThreads
(integer) number of cores (4 default as it is suggested as the optimal value)
Value
it will generate a file names xxx.R1.fastq.clones.clns and it will return the full path to such file
elmerfer/RMiXCR documentation built on May 27, 2023, 5:08 a.m.
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View source: R/RMiXCR_runners.R
| RunMiXCRseqClones | R Documentation |
RunMiXCRseqClones
Description
The assemble command builds clonotypes from alignments obtained with RunMiXCR or
RunMiXCRseqAligment. Clonotypes assembly is performed for a chosen assembling feature (e.g. CDR3 by default).
Usage
RunMiXCRseqClones(alignmentFile, nThreads = 4L)
Arguments
alignmentFile |
the full path name of the vdja file returned by |
nThreads |
(integer) number of cores (4 default as it is suggested as the optimal value) |
Value
it will generate a file names xxx.R1.fastq.clones.clns and it will return the full path to such file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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