OTUscreen: Screening OTUs

Description Usage Arguments Value

Description

Keep major taxa with a predefined error rate and percentage threshold

Usage

1
OTUscreen(ana, error_rate = 0.1, pct_threshold = 20)

Arguments

ana

a phyloseq object with counts/relative abundance OTU table

error_rate

error rate percentage, the default is 0.1 percent

pct_threshold

occurance percentage threshold, the default percentage threshold is 20 percent

Value

a phyloseq object with major taxa


elong0527/NMIT documentation built on May 16, 2019, 3:56 a.m.