plot.cocktail: Plot coefficients from a "cocktail" object

Description Usage Arguments Details Author(s) References Examples

View source: R/method.R

Description

Produces a coefficient profile plot of the coefficient paths for a fitted cocktail object. This function is modified based on the plot function from the glmnet package.

Usage

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## S3 method for class 'cocktail'
plot(x, xvar = c("norm", "lambda"), color = FALSE, label = FALSE, ...)

Arguments

x

fitted cocktail model

xvar

what is on the X-axis. "norm" plots against the L1-norm of the coefficients, "lambda" against the log-lambda sequence.

color

if TRUE, plot the curves with rainbow colors. FALSE is gray colors. Default is FALSE

label

if TRUE, label the curves with variable sequence numbers. Default is FALSE

...

other graphical parameters to plot

Details

A coefficient profile plot is produced.

Author(s)

Yi Yang and Hui Zou
Maintainer: Yi Yang <[email protected]>

References

Yang, Y. and Zou, H. (2013), "A Cocktail Algorithm for Solving The Elastic Net Penalized Cox's Regression in High Dimensions", Statistics and Its Interface, 6:2, 167-173.
https://github.com/emeryyi/fastcox

Friedman, J., Hastie, T. and Tibshirani, R. (2008) "Regularization Paths for Generalized Linear Models via Coordinate Descent", http://www.stanford.edu/~hastie/Papers/glmnet.pdf
Journal of Statistical Software, Vol. 33(1), 1-22 Feb 2010
http://www.jstatsoft.org/v33/i01/

Simon, N., Friedman, J., Hastie, T., Tibshirani, R. (2011) "Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent", Journal of Statistical Software, Vol. 39(5) 1-13
http://www.jstatsoft.org/v39/i05/

Examples

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data(FHT)
m1<-cocktail(x=FHT$x,y=FHT$y,d=FHT$status,alpha=0.5)
par(mfrow=c(1,3))
plot(m1) # plots against the L1-norm of the coefficients
plot(m1,xvar="lambda",label=TRUE) # plots against the log-lambda sequence
plot(m1,color=TRUE)

emeryyi/fastcox documentation built on Sept. 16, 2017, 10:05 a.m.