plot.lrome: Plot coefficients from a "lrome" object

Description Usage Arguments Details References Examples

View source: R/plot.lrome.R

Description

Produces a coefficient profile plot of the coefficient paths for a fitted lrome object. This function is modified based on the plot function from the glmnet package.

Usage

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## S3 method for class 'lrome'
plot(x, xvar = c("norm", "lambda"), color = FALSE, label = FALSE, ...)

Arguments

x

fitted lrome model

xvar

what is on the X-axis. "norm" plots against the L1-norm of the coefficients, "lambda" against the log-lambda sequence.

color

if TRUE, plot the curves with rainbow colors. FALSE is gray colors. Default is FALSE

label

if TRUE, label the curves with variable sequence numbers. Default is FALSE

...

other graphical parameters to plot

Details

A coefficient profile plot is produced.

References

Yang, Y. and Zou, H. (2012), "An Efficient Algorithm for Computing The HHSVM and Its Generalizations," Journal of Computational and Graphical Statistics, 22, 396-415.
BugReport: https://github.com/emeryyi/fastcox.git

Friedman, J., Hastie, T., and Tibshirani, R. (2010), "Regularization paths for generalized linear models via coordinate descent," Journal of Statistical Software, 33, 1.
http://www.jstatsoft.org/v33/i01/

Examples

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data(FHT)
m1 = lrome(x=FHT$x,y=FHT$y)
par(mfrow=c(1,3))
plot(m1) # plots against the L1-norm of the coefficients
plot(m1,xvar="lambda",label=TRUE) # plots against the log-lambda sequence
plot(m1,color=TRUE)

emeryyi/rome documentation built on May 6, 2019, 9:53 a.m.