Man pages for emilygoren/BinQuasi
Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood
| BinQuasi | Analyzing Replicated ChIP Sequencing Data Using... |
| BQ | Call peaks in replicated ChIP-seq data using BinQuasi |
| call.peaks | Call peaks from a list of window-level p-values |
| coef.glm | Extract model coefficients |
| count.table | Create a matrix of ChIP-seq count data |
| duplicated.matrix | Determine duplicate elements |
| NBDev | Fit a negative binomial GLM for a given design matrix |
| PoisDev | Compute Poisson deviances for a given design matrix |
| QL.fit | Fit quasi-likelihood models to replicated ChIP-seq data... |
| QL.results | Obtain p- and q-values using results from 'QL.fit' |
| unique.matrix | Remove duplicate elements |
