Man pages for emittman/dpOMP
Parallelized Gibbs Sampler for DPGMM Model
| cluster_sums | Compute sums for groups |
| compute_weights | Get component weights for all genes |
| construct_precision_mat | Construct precision matrix for full conditional distribution... |
| dot_prod | dot product of two vectors |
| dpgmm | Do MCMC for dpgmm model |
| dpgmm_init | Run MCMC for DPGMMM model, utilizing pilot chain |
| dpOMP-package | Perform MCMC for dpgmm model |
| draw_pi | draw a simplex conditioned on current cluster allocations |
| draw_theta | Draw from full conditional for beta, sigma2 conditioning on... |
| draw_z | Draw z for all genes given the computed weights |
| dsymv | BLAS implemented dsymv routine |
| generate_data | generates a data set from the model |
| get_k_indices | Return indicator that gene G is in cluster k |
| get_tail_sums | Get tail sums of a real-valued vector |
| increment_IGscale | Calculate cluster contribution to IG scale paramter of full... |
| linear_comb_vec | BLAS implemented daxpy routine |
| norm_exp_lp | Subtract max element and exponentiate lp vector |
| n_squares | Return first n square numbers |
| pi_prime | Update component weight for given data |
| quad_form | Computes xTAx using BLAS routines dsymv and ddot (through... |
| rcategorical | Get a multinomial draw given specified weights |
| rinvgamma | Draw random inverse gamma variates |
| solve_normaleq_symm_mat | Solves Ax = b, replacing input b with solution and A with... |
| transpose | transpose a matrix |
