Files in emmalouisedavis/TTI-branching-process
TTI COVID-19 branching process model
DESCRIPTION
Dockerfile
LICENSE
LICENSE.md
NAMESPACE
R/aux_functions.R
R/figuresS1.R
R/outbreak_model.R
R/outbreak_setup.R
R/outbreak_step.R
R/parameter_sweep.R
R/scenario_sim.R
R/utils-pipe.R
README.md
data-raw/FalseNegative_kucirka.csv
data-raw/He_2020_Fig1c_data.xlsx
data-raw/hospTimes.csv
inst/scripts/demo.R
inst/scripts/distributions_fit_and_plot.r
inst/scripts/generatePlots.r
inst/scripts/generateResults.R
inst/scripts/installPackages.r
man/adhere.Rd
man/box_plot_max_weekly_cases.Rd
man/detect_extinct.Rd
man/dist_setup.Rd
man/extinct_prob.Rd
man/inf_fn.Rd
man/make_figure3b.Rd
man/make_figure_2.Rd
man/make_figure_2a.Rd
man/make_figure_3a.Rd
man/make_figure_4.Rd
man/make_figure_S1.Rd
man/make_figure_S2.Rd
man/make_figure_S3.Rd
man/make_figure_S6.Rd
man/make_figure_S7.Rd
man/outbreak_model.Rd
man/outbreak_setup.Rd
man/outbreak_step.Rd
man/parameter_sweep.Rd
man/pipe.Rd
man/rename_variables_for_plotting.Rd
man/scenario_sim.Rd
man/sub_plot.Rd
ringbp.Rproj
tests/testthat.R
tests/testthat/test-aux_functions.R
tests/testthat/test-basicusage.R
tests/testthat/test-outbreak_model.R
tests/testthat/test-outbreak_setup.R
tests/testthat/test-outbreak_step.R
