box_plot_max_weekly_cases: Create box plots of maximum weekly cases by scenario

In emmalouisedavis/TTI-branching-process: TTI COVID-19 branching process model

Description

Create box plots of maximum weekly cases by scenario

Usage

box_plot_max_weekly_cases(
  results = NULL,
  cap_cases = 5000,
  extinct_thresold = 0.1,
  inf_shift_value = 3,
  prop_asym = 0.4,
  facet_scales = "fixed",
  filt_control_effectiveness = 0.4,
  flip_coords = FALSE,
  num_initial_cases = 20,
  record_params = FALSE,
  y_lim = NULL
)

Arguments

results	results of the branching model in a data.frame or tibble
cap_cases	the maximimum number of cases per outbreak scenario; default is 5000
extinct_thresold	filters the minimum proportion of simulations that become extinct per scenario; default 0.8
inf_shift_value	Value of inf_shift to subset data to.
prop_asym	A numeric string defaulting to 0. Filters the proportion of infectiouns are asymptomatic
facet_scales	passed to facet_grid’s scales parameter; default is "fixed"
filt_control_effectiveness	filters by the minimum control effectiveness proportion; default is 0.4
flip_coords	flip coordinates of the box plot; default is FALSE
num_initial_cases	filters by the number of initial cases in the scenario; default is 40
record_params	option to display the params as a caption (used for testing); default FALSE
y_lim	Numeric the limit of the y axis to show.

Author(s)

Amy Gimma and Sam Abbott

emmalouisedavis/TTI-branching-process documentation built on Dec. 20, 2021, 5:17 a.m.