detect_extinct: Calculate proportion of outbreaks that went extinct
In emmalouisedavis/TTI-branching-process: TTI COVID-19 branching process model
Description
Usage
Arguments
Author(s)
Description
Calculate proportion of outbreaks that went extinct
Usage
1
detect_extinct(outbreak_df_week = NULL, cap_cases = NULL, week_range = 12:16)
Arguments
outbreak_df_week
data.table weekly cases producted by the outbreak model
cap_cases
integer number of cumulative cases at which the branching process was terminated
week_range
The range of weeks for which zero cases must be zero for a run to be considered extinct. Probably want the last 3 or so weeks.
Author(s)
Joel Hellewell
emmalouisedavis/TTI-branching-process documentation built on Dec. 20, 2021, 5:17 a.m.
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Description Usage Arguments Author(s)
Description
Calculate proportion of outbreaks that went extinct
Usage
1 | detect_extinct(outbreak_df_week = NULL, cap_cases = NULL, week_range = 12:16)
|
Arguments
outbreak_df_week |
data.table weekly cases producted by the outbreak model |
cap_cases |
integer number of cumulative cases at which the branching process was terminated |
week_range |
The range of weeks for which zero cases must be zero for a run to be considered extinct. Probably want the last 3 or so weeks. |
Author(s)
Joel Hellewell
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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