emvolz-phylodynamics/skyspline: Phylodynamic inference of population size and reproduction numbers
Phylodynamic inference of epidemic population size and reproduction numbers given time scaled pathogen phylogenies. This package supports standard coalescent models and multi-scale coalescent models that account for within-host evolution. Methods are provided for simulating trees. Estimation of standard errors can be accomplished by likelihood profiling or parametric bootstrap.
Getting started
Browse package contents
Package details |
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| Author | Erik M Volz |
| Maintainer | Erik M Volz <erik.volz@gmail.com> |
| License | GPL (>= 2) |
| Version | 0.1 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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