Phylodynamic inference of epidemic population size and reproduction numbers given time scaled pathogen phylogenies. This package supports standard coalescent models and multi-scale coalescent models that account for within-host evolution. Methods are provided for simulating trees. Estimation of standard errors can be accomplished by likelihood profiling or parametric bootstrap.
Package details |
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Author | Erik M Volz |
Maintainer | Erik M Volz <erik.volz@gmail.com> |
License | GPL (>= 2) |
Version | 0.1 |
Package repository | View on GitHub |
Installation |
Install the latest version of this package by entering the following in R:
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