Files in eonurk/cinaR
A Computational Pipeline for Bulk 'ATAC-Seq' Profiles
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md
R/cinaR.R
R/color_values.R
R/enrichment_functions.R
R/example-data.R
R/utils.R
R/visualization_functions.R
R/zzz.R
README.Rmd
README.md
_pkgdown.yml
data/VP2008.rda
data/atac_seq_consensus_bm.rda
data/grch37.rda
data/grch38.rda
data/grcm38.rda
docs/404.html
docs/articles/cinaR.html
docs/articles/cinaR.png
docs/articles/cinaR_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/cinaR_files/anchor-sections-1.0/anchor-sections.css
docs/articles/cinaR_files/anchor-sections-1.0/anchor-sections.js
docs/articles/cinaR_files/figure-html/unnamed-chunk-11-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-12-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-13-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-14-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-15-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-16-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-17-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-18-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-19-1.png
docs/articles/cinaR_files/figure-html/unnamed-chunk-20-1.png
docs/articles/cinaR_files/header-attrs-2.5/header-attrs.js
docs/articles/cinaR_files/header-attrs-2.6/header-attrs.js
docs/articles/cinaR_files/header-attrs-2.7/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GSEA.html
docs/reference/HPEA.html
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/annotatePeaks.html
docs/reference/bed.html
docs/reference/cinaR.html
docs/reference/color_values.html
docs/reference/differentialAnalyses.html
docs/reference/dot_plot-1.png
docs/reference/dot_plot.html
docs/reference/figures/cinaR.png
docs/reference/figures/overview@5x.png
docs/reference/figures/unnamed-chunk-3-1.png
docs/reference/figures/unnamed-chunk-4-1.png
docs/reference/figures/unnamed-chunk-5-1.png
docs/reference/figures/unnamed-chunk-6-1.png
docs/reference/filterConsensus.html
docs/reference/grch37.html
docs/reference/grch38.html
docs/reference/grcm38.html
docs/reference/heatmap_differential-1.png
docs/reference/heatmap_differential.html
docs/reference/heatmap_plot-1.png
docs/reference/heatmap_plot.html
docs/reference/heatmap_var_peaks-1.png
docs/reference/heatmap_var_peaks.html
docs/reference/index.html
docs/reference/mouse2human.html
docs/reference/normalizeConsensus.html
docs/reference/pca_plot-1.png
docs/reference/pca_plot-2.png
docs/reference/pca_plot.html
docs/reference/run_enrichment.html
docs/reference/scale_rows.html
docs/reference/show_comparisons.html
docs/reference/verboseFn.html
docs/reference/vp2008.html
docs/sitemap.xml
man/GSEA.Rd
man/HPEA.Rd
man/annotatePeaks.Rd
man/bed.Rd
man/cinaR.Rd
man/color_values.Rd
man/differentialAnalyses.Rd
man/dot_plot.Rd
man/figures/cinaR.png
man/figures/overview@5x.png
man/figures/unnamed-chunk-3-1.png
man/figures/unnamed-chunk-4-1.png
man/figures/unnamed-chunk-5-1.png
man/figures/unnamed-chunk-6-1.png
man/filterConsensus.Rd
man/grch37.Rd
man/grch38.Rd
man/grcm38.Rd
man/heatmap_differential.Rd
man/heatmap_var_peaks.Rd
man/normalizeConsensus.Rd
man/pca_plot.Rd
man/run_enrichment.Rd
man/scale_rows.Rd
man/show_comparisons.Rd
man/verboseFn.Rd
man/vp2008.Rd
vignettes/.gitignore
vignettes/cinaR.Rmd
