NEWS.md

In eonurk/cinaR: A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

cinaR 0.2.4

• Bug fix and changes:
  • Bioconductor related packages are suggested
  • Added .on_attach() for smooth CRAN checks

cinaR 0.2.3

• Minor improvements

cinaR 0.2.2

• Added:
• comparison.scheme either set to OVO (default) which will compare each contrasts to each other. If it's set to OVA each contrast will be compared to rest.

cinaR 0.2.1

• Added:
• An extra argument sv.number is added if user wants to set the number of surrogate variables. More info here.
• verbose argument, default set to TRUE. I think, I have implemented this in a really cool way!
• cinaRgenesets added to vignette.

cinaR 0.2.0

• Added:
• heatmap_differential function to be able to plot the heatmaps of a given comparison.

• show_comparisons is added to see the available comparisons before you plot differential heatmaps.

• Changed:

• heatmap_plot is now renamed to heatmap_var_peaks, which makes more sense.

cinaR 0.1.1

This version is even cooler, lol:

• Comparisons are now sorted according to contrast order
• Added bulk RNA-seq support/documentation
• Removed many dependencies
• Small bug fixes and improvements

cinaR 0.1.0

• cinaR is published in CRAN repository!

eonurk/cinaR documentation built on May 23, 2024, 7:08 a.m.