update_voc_label: Label the Variant of Concern

In epiforecasts/forecast.vocs: Forecast Case and Sequence Notifications using Variant of Concern Strain Dynamics

Label the Variant of Concern

Description

Assign a custom label to the variant of concern in the output from fv_tidy_posterior().

Usage

update_voc_label(posterior, label, target_label = "VOC")

Arguments

posterior	A dataframe of posterior output as produced by fv_tidy_posterior(). For forecast dates to be extracted data with value_type == "cases" must be present.
label	Character string indicating the new label to use for the variant of concern.
target_label	A character string defaulting to "VOC". Indicates the current label for the variant of concern.

Value

A list of data frames as returned by 'fv_tidy_posterior() but with updated labels.

See Also

Functions used for postprocessing of model fits convert_to_stanfit(), extract_draws(), extract_forecast_dates(), fv_extract_forecast(), fv_posterior(), fv_tidy_posterior(), link_dates_with_posterior(), link_obs_with_posterior(), plot.fv_posterior(), print.fv_posterior(), quantiles_to_long(), summary.fv_posterior()

Examples

p <- fv_example(strains = 2, type = "posterior")
p <- update_voc_label(p, "Delta")
summary(p, type = "cases")
summary(p, type = "model")

epiforecasts/forecast.vocs documentation built on May 14, 2023, 2 p.m.