API for epigen/RnBeadsAnnotationCreator
RnBeads annotation creator

Global functions
append.cpg.stats Source code
createAnnotationPackage Source code
createAnnotationPackage.hg19 Source code
createAnnotationPackage.hg38 Source code
createAnnotationPackage.mm10 Source code
createAnnotationPackage.mm9 Source code
createAnnotationPackage.rn5 Source code
createExampleDataset Source code
createPackageScaffold Source code
download.ensembl.table Source code
get.cpg.stats Source code
match.chrom.names Source code
rnb.add.descriptions Source code
rnb.construct.snp.types Source code
rnb.create.mappings Source code
rnb.export.annotations.to.data.files Source code
rnb.fix.strand Source code
rnb.genome.data Source code
rnb.get.illumina.annotation.columns Source code
rnb.get.package.data.file Source code
rnb.infinium.probe.coords Source code
rnb.load.bed Source code
rnb.load.probe.annotation.geo Source code
rnb.probe.infos.to.GRanges Source code
rnb.probes.fix.infinium.columns Source code
rnb.seq.bisulfite.convert Source code
rnb.seq.get.expected.sequence Source code
rnb.seq.guess.strand.allele Source code
rnb.seq.guess.strands Source code
rnb.seq.probe.mismatches Source code
rnb.seq.replace Source code
rnb.seq.reverse.complement Source code
rnb.sort.regions Source code
rnb.split.snps Source code
rnb.update.controls450.combine Source code
rnb.update.controls450.enrich Source code
rnb.update.controlsEPIC.enrich Source code
rnb.update.dbsnp Source code
rnb.update.download.cgis Source code
rnb.update.download.dbsnp Source code
rnb.update.load.vcf Source code
rnb.update.probe.annotation.compiled Source code
rnb.update.probe.annotation.cpg.context Source code
rnb.update.probe.annotation.cr Source code
rnb.update.probe.annotation.geo Source code
rnb.update.probe.annotation.guess.strand Source code
rnb.update.probe.annotation.methylumi Source code
rnb.update.probe.annotation.msnps Source code
rnb.update.probe.annotation.snps Source code
rnb.update.probe.annotation.snps.chrom Source code
rnb.update.probe27k.annotation Source code
rnb.update.probe450k.annotation Source code
rnb.update.probeEPIC.annotation Source code
rnb.update.probes450.combine Source code
rnb.update.probesEPIC.snps Source code
rnb.update.region.annotation Source code
rnb.update.region.annotation.genes Source code
rnb.update.region.annotation.tiling Source code
rnb.update.site.annotation.with.cgistatus Source code
rnb.update.site.annotation.with.probes Source code
rnb.update.site.annotation.with.snps Source code
rnb.update.sites Source code
update.annot Source code
epigen/RnBeadsAnnotationCreator documentation built on May 13, 2017, 7:11 p.m.