Description Details Methods Author(s)
Base-pair resolution quantitative data.
This class extends EpivizTrackData-class directly. As such, its object field is constrained to contain a GIntervalTree object. Quantitative data for each genomic position is assumed to be stored in the elementMetadata slot of object.
.checkColumns(columns): Checks argument columns is a subset of names(mcols(object)).
.getColumns(): Returns names(mcols(object)).
plot(): Calls the lineChart method of EpivizDeviceMgr-class with columns as argument.
getMeasurements(): Returns named character vector. Entries are of format '<name>$<column>'. Vector names are of format
'<id>__<column>'.
parseMeasurement(msId): Parses measurement of format '<id>__<column>'.
packageData(msId): Get data for msId for rows overlapping curQuery. Returns a list with components: min: min value for data range, max: max value for data range, data: list with slots: bp: genomic location,
value: numeric data value.
Hector Corrada Bravo
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