EpivizBpData-class: 'EpivizBpData' objects

Description Details Methods Author(s)

Description

Base-pair resolution quantitative data.

Details

This class extends EpivizTrackData-class directly. As such, its object field is constrained to contain a GIntervalTree object. Quantitative data for each genomic position is assumed to be stored in the elementMetadata slot of object.

Methods

.checkColumns(columns): Checks argument columns is a subset of names(mcols(object)).

.getColumns(): Returns names(mcols(object)).

plot(): Calls the lineChart method of EpivizDeviceMgr-class with columns as argument.

getMeasurements(): Returns named character vector. Entries are of format '<name>$<column>'. Vector names are of format '<id>__<column>'.

parseMeasurement(msId): Parses measurement of format '<id>__<column>'.

packageData(msId): Get data for msId for rows overlapping curQuery. Returns a list with components: min: min value for data range, max: max value for data range, data: list with slots: bp: genomic location, value: numeric data value.

Author(s)

Hector Corrada Bravo


epiviz/epivizr-tmp documentation built on May 16, 2019, 8:19 a.m.