tcga_colon_expression: Example exon-level RNAseq data from TCGA project for epivizr.

Description Usage Format Source Examples

Description

A SummarizedExperiment object containing exon-level counts from RNAseq data from the TCGA project. Only exons in human chromosome 11 are included.

Usage

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Format

A SummarizedExperiment object with 12,800 rows (exons) and 40 samples.

assay(colonSE)

exon-level count matrix

colData(colonSE)

a DataFrame containing sample information. Normal/Tumor status is given in column sample_type

Source

TCGA project: https://tcga-data.nci.nih.gov/tcga/

Examples

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epiviz/epivizr-tmp documentation built on May 16, 2019, 8:19 a.m.