tcga_colon_curves: Example methylation data (smoothed methylation levels) for...
In epiviz/epivizr: R Interface to epiviz web app
Description
Usage
Format
Source
Description
Example results from methylation analysis of human chromosome 11 using the minfi::minfi-package package
of TCGA 450k beadarray samples. This object contains probe cluster level methylation estimates from
minfi::blockFinder().
Usage
1
Format
A GRanges object with 7135 ranges and mcols:
idprobe cluster id
typeprobe cluster type
blockgroupprobe cluster block group
diffraw methylation percentage difference between normal and tumor
smoothsmooth methylation percentage difference between normal and tumor
normalMeanmean methylation estimate for normal samples
cancerMeanmean methylation estimate for cancer samples
Source
TCGA project: https://tcga-data.nci.nih.gov/tcga/
epiviz/epivizr documentation built on Aug. 5, 2021, 6:37 p.m.
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Description Usage Format Source
Description
Example results from methylation analysis of human chromosome 11 using the minfi::minfi-package package
of TCGA 450k beadarray samples. This object contains probe cluster level methylation estimates from
minfi::blockFinder().
Usage
1 |
Format
A GRanges object with 7135 ranges and mcols:
idprobe cluster id
typeprobe cluster type
blockgroupprobe cluster block group
diffraw methylation percentage difference between normal and tumor
smoothsmooth methylation percentage difference between normal and tumor
normalMeanmean methylation estimate for normal samples
cancerMeanmean methylation estimate for cancer samples
Source
TCGA project: https://tcga-data.nci.nih.gov/tcga/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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