tcga_colon_curves: Example methylation data (smoothed methylation levels) for...

Description Usage Format Value Source

Description

Example results from methylation analysis of human chromosome 11 using the minfi-package package of TCGA 450k beadarray samples. This object contains probe cluster level methylation estimates from blockFinder.

Usage

1

Format

A GRanges object with 7135 ranges and mcols:

id

probe cluster id

type

probe cluster type

blockgroup

probe cluster block group

diff

raw methylation percentage difference between normal and tumor

smooth

smooth methylation percentage difference between normal and tumor

normalMean

mean methylation estimate for normal samples

cancerMean

mean methylation estimate for cancer samples

Value

A GRanges object.

Source

TCGA project: https://tcga-data.nci.nih.gov/tcga/


epiviz/epivizr documentation built on Oct. 9, 2018, 5:07 a.m.