tcga_colon_expression: Example exon-level RNAseq data from TCGA project for epivizr...

Description Usage Format Value Source

Description

A RangedSummarizedExperiment object containing exon-level counts from RNAseq data for colon tumor and normal tissue from the TCGA project. Only exons in human chromosome 11 are included.

Usage

1

Format

A RangedSummarizedExperiment object with 12,800 rows (exons) and 40 samples.

assay(tcga_colon_expression)

exon-level count matrix

colData(tcga_colon_expression)

a DataFrame containing sample information. Normal/Tumor status is given in column sample_type

Value

A RangedSummarizedExperiment object.

Source

TCGA project: https://tcga-data.nci.nih.gov/tcga/


epiviz/epivizr documentation built on Oct. 9, 2018, 5:07 a.m.