compute_de_table: compute_de_table = helper function to create differential...
In ergonyc/omicser: NDCN Omics Browser
View source: R/pre_process_helpers.R
compute_de_table R Documentation
compute_de_table = helper function to create differential expression table
Description
compute_de_table = helper function to create differential expression table
Usage
compute_de_table(adata, comp_types, test_types, obs_names, sc)
Arguments
adata
the anndata object
comp_types
what kind of comparisons? 'allVrest' or 'a V b'
test_types
statistical tests - t-test, etc
obs_names
name of the adata$obs column defining the comparision groups
sc
scanpy
Value
diff_exp, differential expression table
Examples
TODO
ergonyc/omicser documentation built on June 15, 2022, 3:02 p.m.
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View source: R/pre_process_helpers.R
| compute_de_table | R Documentation |
compute_de_table = helper function to create differential expression table
Description
compute_de_table = helper function to create differential expression table
Usage
compute_de_table(adata, comp_types, test_types, obs_names, sc)
Arguments
adata |
the anndata object |
comp_types |
what kind of comparisons? 'allVrest' or 'a V b' |
test_types |
statistical tests - t-test, etc |
obs_names |
name of the adata$obs column defining the comparision groups |
sc |
scanpy |
Value
diff_exp, differential expression table
Examples
TODO
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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