selDB: Select db for GO

In ericaenjoy3/GOplot: GO Enrichment Test and Clustering

Description

Initate gset class by making use of gene sets from package msgidb

Usage

selDB(major = c("C2.CP", "C3.MIR", "C3.TFT", "C5.BP", "C5.CC"),
  minor = NA, type = c("symbols", "entrez"),
  species = c("human", "mouse"))

Arguments

major	the major category.
minor	a character string to subset gene categories with matched names through grep. Set NA to ignore.
type	either symbols or entrez.
species	either human or mouse.

Details

For details about the gene sets, please see package msgidb.

Value

A gset object.

Examples

gset.obj <- selDB(major="C2.CP", minor="Reactome", type="symbols", species="mouse")

ericaenjoy3/GOplot documentation built on May 6, 2019, 9:50 p.m.