kHeat-methods: kHeat

In ericaenjoy3/TPMaccess: RNA data analysis

Description

K-mean clustering and heatmap

Usage

kHeat(obj, pdffout, k = NULL, log2.it = TRUE, scale.it = TRUE,
  small = 0.05)

## S4 method for signature 'tpm'
kHeat(obj, pdffout, k = NULL, log2.it = TRUE,
  scale.it = TRUE, small = 0.05)

Arguments

obj	A tpm object.
pdffout	A character string specify pdf output file.
k	A numeric value specifying the number of clusters.
log2.it	A logical value specifying whether to log2 transform the tpm value data.
scale.it	A logical value specifying whether to row standardize the tpm value data.
small	A numeric value indicating the adjustment to the TPM values before log2 transformation.

ericaenjoy3/TPMaccess documentation built on May 14, 2019, 2:37 p.m.