R/f_plot_CI_individuals_driver.R
In erikerhardt/isogasex: Isotopic gas exchange using TDL and Licor input. Updated version of package tdllicor
#' plot each individual variable
#'
#' For every variable, creates plots using \code{\link{f_plot_CI_individuals}}.
#'
#' @param val xxxPARAMxxx
#' @param R_bootstrap xxxPARAMxxx
#' @param plot_format_list xxxPARAMxxx
#' @param output_fn_prefix xxxPARAMxxx
#'
#' @return NULL xxxRETURNxxx
#'
f_plot_CI_individuals_driver <-
function# plot each individual variable
###
(val
###
, R_bootstrap
###
, plot_format_list
###
, output_fn_prefix
###
)
{
##details<<
## For every variable, creates plots using \code{\link{f_plot_CI_individuals}}.
f_plot_CI_individuals(val$bs$TDL$conc12CO2 , val$sum$TDL$conc12CO2 , val$CI$TDL$conc12CO2 , "val$sum$TDL$conc12CO2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$conc13CO2 , val$sum$TDL$conc13CO2 , val$CI$TDL$conc13CO2 , "val$sum$TDL$conc13CO2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$TGApressure , val$sum$TDL$TGApressure , val$CI$TDL$TGApressure , "val$sum$TDL$TGApressure ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$MassFlow1 , val$sum$TDL$MassFlow1 , val$CI$TDL$MassFlow1 , "val$sum$TDL$MassFlow1 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$Pressure1 , val$sum$TDL$Pressure1 , val$CI$TDL$Pressure1 , "val$sum$TDL$Pressure1 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$MassFlow2 , val$sum$TDL$MassFlow2 , val$CI$TDL$MassFlow2 , "val$sum$TDL$MassFlow2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$Pressure2 , val$sum$TDL$Pressure2 , val$CI$TDL$Pressure2 , "val$sum$TDL$Pressure2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$PressureProMan , val$sum$TDL$PressureProMan , val$CI$TDL$PressureProMan , "val$sum$TDL$PressureProMan ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_hi_12 , val$sum$TDL$interp_tank_hi_12 , val$CI$TDL$interp_tank_hi_12 , "val$sum$TDL$interp_tank_hi_12 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_hi_13 , val$sum$TDL$interp_tank_hi_13 , val$CI$TDL$interp_tank_hi_13 , "val$sum$TDL$interp_tank_hi_13 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_low_12 , val$sum$TDL$interp_tank_low_12 , val$CI$TDL$interp_tank_low_12 , "val$sum$TDL$interp_tank_low_12 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_low_13 , val$sum$TDL$interp_tank_low_13 , val$CI$TDL$interp_tank_low_13 , "val$sum$TDL$interp_tank_low_13 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_reference_12, val$sum$TDL$interp_reference_12, val$CI$TDL$interp_reference_12, "val$sum$TDL$interp_reference_12", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_reference_13, val$sum$TDL$interp_reference_13, val$CI$TDL$interp_reference_13, "val$sum$TDL$interp_reference_13", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$chamber_12 , val$sum$TDL$chamber_12 , val$CI$TDL$chamber_12 , "val$sum$TDL$chamber_12 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$chamber_13 , val$sum$TDL$chamber_13 , val$CI$TDL$chamber_13 , "val$sum$TDL$chamber_13 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$FTime , val$sum$Licor$FTime , val$CI$Licor$FTime , "val$sum$Licor$FTime ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$A , val$sum$Licor$A , val$CI$Licor$A , "val$sum$Licor$A ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$gsc , val$sum$Licor$gsc , val$CI$Licor$gsc , "val$sum$Licor$gsc ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ci , val$sum$Licor$Ci , val$CI$Licor$Ci , "val$sum$Licor$Ci ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$E , val$sum$Licor$E , val$CI$Licor$E , "val$sum$Licor$E ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$VPD , val$sum$Licor$VPD , val$CI$Licor$VPD , "val$sum$Licor$VPD ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$La , val$sum$Licor$La , val$CI$Licor$La , "val$sum$Licor$La ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$StmRat , val$sum$Licor$StmRat , val$CI$Licor$StmRat , "val$sum$Licor$StmRat ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$gbw , val$sum$Licor$gbw , val$CI$Licor$gbw , "val$sum$Licor$gbw ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$temp_air , val$sum$Licor$temp_air , val$CI$Licor$temp_air , "val$sum$Licor$temp_air ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$temp_leaf , val$sum$Licor$temp_leaf , val$CI$Licor$temp_leaf , "val$sum$Licor$temp_leaf ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$temp_block, val$sum$Licor$temp_block, val$CI$Licor$temp_block, "val$sum$Licor$temp_block", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ce , val$sum$Licor$Ce , val$CI$Licor$Ce , "val$sum$Licor$Ce ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Co , val$sum$Licor$Co , val$CI$Licor$Co , "val$sum$Licor$Co ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xin , val$sum$Licor$xin , val$CI$Licor$xin , "val$sum$Licor$xin ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xout , val$sum$Licor$xout , val$CI$Licor$xout , "val$sum$Licor$xout ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$rh_ref , val$sum$Licor$rh_ref , val$CI$Licor$rh_ref , "val$sum$Licor$rh_ref ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$rh_sam , val$sum$Licor$rh_sam , val$CI$Licor$rh_sam , "val$sum$Licor$rh_sam ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$uin , val$sum$Licor$uin , val$CI$Licor$uin , "val$sum$Licor$uin ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$par_int , val$sum$Licor$par_int , val$CI$Licor$par_int , "val$sum$Licor$par_int ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$par_ext , val$sum$Licor$par_ext , val$CI$Licor$par_ext , "val$sum$Licor$par_ext ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Atm_press , val$sum$Licor$Atm_press , val$CI$Licor$Atm_press , "val$sum$Licor$Atm_press ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$CsMch , val$sum$Licor$CsMch , val$CI$Licor$CsMch , "val$sum$Licor$CsMch ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$HsMch , val$sum$Licor$HsMch , val$CI$Licor$HsMch , "val$sum$Licor$HsMch ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$StableF , val$sum$Licor$StableF , val$CI$Licor$StableF , "val$sum$Licor$StableF ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Status , val$sum$Licor$Status , val$CI$Licor$Status , "val$sum$Licor$Status ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$VpdA , val$sum$Licor$VpdA , val$CI$Licor$VpdA , "val$sum$Licor$VpdA ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ci_Ca , val$sum$Licor$Ci_Ca , val$CI$Licor$Ci_Ca , "val$sum$Licor$Ci_Ca ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$pi , val$sum$Licor$pi , val$CI$Licor$pi , "val$sum$Licor$pi ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$uc_20_mV , val$sum$Licor$uc_20_mV , val$CI$Licor$uc_20_mV , "val$sum$Licor$uc_20_mV ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$uc_21_mV , val$sum$Licor$uc_21_mV , val$CI$Licor$uc_21_mV , "val$sum$Licor$uc_21_mV ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$U_S , val$sum$Licor$U_S , val$CI$Licor$U_S , "val$sum$Licor$U_S ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Trans , val$sum$Licor$Trans , val$CI$Licor$Trans , "val$sum$Licor$Trans ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$CndCO2 , val$sum$Licor$CndCO2 , val$CI$Licor$CndCO2 , "val$sum$Licor$CndCO2 ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ref_mV , val$sum$Licor$Ref_mV , val$CI$Licor$Ref_mV , "val$sum$Licor$Ref_mV ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xTemp1 , val$sum$Licor$xTemp1 , val$CI$Licor$xTemp1 , "val$sum$Licor$xTemp1 ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xTemp2 , val$sum$Licor$xTemp2 , val$CI$Licor$xTemp2 , "val$sum$Licor$xTemp2 ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$gain_12C , val$calc$sum$gain_12C , val$calc$CI$gain_12C , "val$calc$sum$gain_12C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$gain_13C , val$calc$sum$gain_13C , val$calc$CI$gain_13C , "val$calc$sum$gain_13C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$offset_12C , val$calc$sum$offset_12C , val$calc$CI$offset_12C , "val$calc$sum$offset_12C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$offset_13C , val$calc$sum$offset_13C , val$calc$CI$offset_13C , "val$calc$sum$offset_13C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_12Ce , val$calc$sum$reference_12Ce , val$calc$CI$reference_12Ce , "val$calc$sum$reference_12Ce ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_13Ce , val$calc$sum$reference_13Ce , val$calc$CI$reference_13Ce , "val$calc$sum$reference_13Ce ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Co , val$calc$sum$chamber_12Co , val$calc$CI$chamber_12Co , "val$calc$sum$chamber_12Co ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Co , val$calc$sum$chamber_13Co , val$calc$CI$chamber_13Co , "val$calc$sum$chamber_13Co ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_TotalCe , val$calc$sum$reference_TotalCe , val$calc$CI$reference_TotalCe , "val$calc$sum$reference_TotalCe ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCo , val$calc$sum$chamber_TotalCo , val$calc$CI$chamber_TotalCo , "val$calc$sum$chamber_TotalCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_Total_diff_CeCo , val$calc$sum$chamber_reference_Total_diff_CeCo , val$calc$CI$chamber_reference_Total_diff_CeCo , "val$calc$sum$chamber_reference_Total_diff_CeCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_12_diff_CeCo , val$calc$sum$chamber_reference_12_diff_CeCo , val$calc$CI$chamber_reference_12_diff_CeCo , "val$calc$sum$chamber_reference_12_diff_CeCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_13_diff_CeCo , val$calc$sum$chamber_reference_13_diff_CeCo , val$calc$CI$chamber_reference_13_diff_CeCo , "val$calc$sum$chamber_reference_13_diff_CeCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$xi , val$calc$sum$xi , val$calc$CI$xi , "val$calc$sum$xi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
# f_plot_CI_individuals(val$calc$bs$flow_adjusted , val$calc$sum$flow_adjusted , val$calc$CI$flow_adjusted , "val$calc$sum$flow_adjusted ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix) # 9/5/2012
f_plot_CI_individuals(val$calc$bs$TDL_A_photosynthesis , val$calc$sum$TDL_A_photosynthesis , val$calc$CI$TDL_A_photosynthesis , "val$calc$sum$TDL_A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$TDL_12A_photosynthesis , val$calc$sum$TDL_12A_photosynthesis , val$calc$CI$TDL_12A_photosynthesis , "val$calc$sum$TDL_12A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$TDL_13A_photosynthesis , val$calc$sum$TDL_13A_photosynthesis , val$calc$CI$TDL_13A_photosynthesis , "val$calc$sum$TDL_13A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Licor_A_photosynthesis , val$calc$sum$Licor_A_photosynthesis , val$calc$CI$Licor_A_photosynthesis , "val$calc$sum$Licor_A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_from_ratios_in_out , val$calc$sum$Delta_from_ratios_in_out , val$calc$CI$Delta_from_ratios_in_out , "val$calc$sum$Delta_from_ratios_in_out ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_from_A_ratio , val$calc$sum$Delta_from_A_ratio , val$calc$CI$Delta_from_A_ratio , "val$calc$sum$Delta_from_A_ratio ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$VPD , val$calc$sum$VPD , val$calc$CI$VPD , "val$calc$sum$VPD ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$E_transpiration , val$calc$sum$E_transpiration , val$calc$CI$E_transpiration , "val$calc$sum$E_transpiration ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$leaf_temp , val$calc$sum$leaf_temp , val$calc$CI$leaf_temp , "val$calc$sum$leaf_temp ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$air_temp , val$calc$sum$air_temp , val$calc$CI$air_temp , "val$calc$sum$air_temp ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$light_in , val$calc$sum$light_in , val$calc$CI$light_in , "val$calc$sum$light_in ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$light_out , val$calc$sum$light_out , val$calc$CI$light_out , "val$calc$sum$light_out ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_delta_e , val$calc$sum$reference_delta_e , val$calc$CI$reference_delta_e , "val$calc$sum$reference_delta_e ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_delta_o , val$calc$sum$chamber_delta_o , val$calc$CI$chamber_delta_o , "val$calc$sum$chamber_delta_o ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_delta_diff_CoCe , val$calc$sum$chamber_reference_delta_diff_CoCe , val$calc$CI$chamber_reference_delta_diff_CoCe , "val$calc$sum$chamber_reference_delta_diff_CoCe ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_obs , val$calc$sum$Delta_obs , val$calc$CI$Delta_obs , "val$calc$sum$Delta_obs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_obs_permil , val$calc$sum$Delta_obs_permil , val$calc$CI$Delta_obs_permil , "val$calc$sum$Delta_obs_permil ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$delta_13C_Assim , val$calc$sum$delta_13C_Assim , val$calc$CI$delta_13C_Assim , "val$calc$sum$delta_13C_Assim ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$p , val$calc$sum$p , val$calc$CI$p , "val$calc$sum$p ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$delta_13C_Resp , val$calc$sum$delta_13C_Resp , val$calc$CI$delta_13C_Resp , "val$calc$sum$delta_13C_Resp ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCa , val$calc$sum$chamber_TotalCa , val$calc$CI$chamber_TotalCa , "val$calc$sum$chamber_TotalCa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Ca , val$calc$sum$chamber_12Ca , val$calc$CI$chamber_12Ca , "val$calc$sum$chamber_12Ca ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Ca , val$calc$sum$chamber_13Ca , val$calc$CI$chamber_13Ca , "val$calc$sum$chamber_13Ca ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCs , val$calc$sum$chamber_TotalCs , val$calc$CI$chamber_TotalCs , "val$calc$sum$chamber_TotalCs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Cs , val$calc$sum$chamber_12Cs , val$calc$CI$chamber_12Cs , "val$calc$sum$chamber_12Cs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Cs , val$calc$sum$chamber_13Cs , val$calc$CI$chamber_13Cs , "val$calc$sum$chamber_13Cs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpa , val$calc$sum$chamber_Totalpa , val$calc$CI$chamber_Totalpa , "val$calc$sum$chamber_Totalpa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12pa , val$calc$sum$chamber_12pa , val$calc$CI$chamber_12pa , "val$calc$sum$chamber_12pa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13pa , val$calc$sum$chamber_13pa , val$calc$CI$chamber_13pa , "val$calc$sum$chamber_13pa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalps , val$calc$sum$chamber_Totalps , val$calc$CI$chamber_Totalps , "val$calc$sum$chamber_Totalps ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12ps , val$calc$sum$chamber_12ps , val$calc$CI$chamber_12ps , "val$calc$sum$chamber_12ps ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13ps , val$calc$sum$chamber_13ps , val$calc$CI$chamber_13ps , "val$calc$sum$chamber_13ps ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgbw , val$calc$sum$chamber_Totalgbw , val$calc$CI$chamber_Totalgbw , "val$calc$sum$chamber_Totalgbw ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgbc , val$calc$sum$chamber_Totalgbc , val$calc$CI$chamber_Totalgbc , "val$calc$sum$chamber_Totalgbc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gbc , val$calc$sum$chamber_12gbc , val$calc$CI$chamber_12gbc , "val$calc$sum$chamber_12gbc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gbc , val$calc$sum$chamber_13gbc , val$calc$CI$chamber_13gbc , "val$calc$sum$chamber_13gbc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgsw , val$calc$sum$chamber_Totalgsw , val$calc$CI$chamber_Totalgsw , "val$calc$sum$chamber_Totalgsw ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgsc , val$calc$sum$chamber_Totalgsc , val$calc$CI$chamber_Totalgsc , "val$calc$sum$chamber_Totalgsc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gsc , val$calc$sum$chamber_12gsc , val$calc$CI$chamber_12gsc , "val$calc$sum$chamber_12gsc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gsc , val$calc$sum$chamber_13gsc , val$calc$CI$chamber_13gsc , "val$calc$sum$chamber_13gsc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgtc , val$calc$sum$chamber_Totalgtc , val$calc$CI$chamber_Totalgtc , "val$calc$sum$chamber_Totalgtc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gtc , val$calc$sum$chamber_12gtc , val$calc$CI$chamber_12gtc , "val$calc$sum$chamber_12gtc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gtc , val$calc$sum$chamber_13gtc , val$calc$CI$chamber_13gtc , "val$calc$sum$chamber_13gtc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCi , val$calc$sum$chamber_TotalCi , val$calc$CI$chamber_TotalCi , "val$calc$sum$chamber_TotalCi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Ci , val$calc$sum$chamber_12Ci , val$calc$CI$chamber_12Ci , "val$calc$sum$chamber_12Ci ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Ci , val$calc$sum$chamber_13Ci , val$calc$CI$chamber_13Ci , "val$calc$sum$chamber_13Ci ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpi , val$calc$sum$chamber_Totalpi , val$calc$CI$chamber_Totalpi , "val$calc$sum$chamber_Totalpi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12pi , val$calc$sum$chamber_12pi , val$calc$CI$chamber_12pi , "val$calc$sum$chamber_12pi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13pi , val$calc$sum$chamber_13pi , val$calc$CI$chamber_13pi , "val$calc$sum$chamber_13pi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpi_pa , val$calc$sum$chamber_Totalpi_pa , val$calc$CI$chamber_Totalpi_pa , "val$calc$sum$chamber_Totalpi_pa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_simple_for_gm , val$calc$sum$chamber_Delta_i_simple_for_gm , val$calc$CI$chamber_Delta_i_simple_for_gm , "val$calc$sum$chamber_Delta_i_simple_for_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_simple_for_modeling , val$calc$sum$chamber_Delta_i_simple_for_modeling , val$calc$CI$chamber_Delta_i_simple_for_modeling , "val$calc$sum$chamber_Delta_i_simple_for_modeling ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_complex_for_gm , val$calc$sum$chamber_Delta_i_complex_for_gm , val$calc$CI$chamber_Delta_i_complex_for_gm , "val$calc$sum$chamber_Delta_i_complex_for_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_simple_for_gm_Delta_obs , val$calc$sum$chamber_Delta_i_simple_for_gm_Delta_obs , val$calc$CI$chamber_Delta_i_simple_for_gm_Delta_obs , "val$calc$sum$chamber_Delta_i_simple_for_gm_Delta_obs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_complex_for_gm_Delta_obs , val$calc$sum$chamber_Delta_i_complex_for_gm_Delta_obs , val$calc$CI$chamber_Delta_i_complex_for_gm_Delta_obs , "val$calc$sum$chamber_Delta_i_complex_for_gm_Delta_obs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgm_point_simple , val$calc$sum$chamber_Totalgm_point_simple , val$calc$CI$chamber_Totalgm_point_simple , "val$calc$sum$chamber_Totalgm_point_simple ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gm_point_simple , val$calc$sum$chamber_12gm_point_simple , val$calc$CI$chamber_12gm_point_simple , "val$calc$sum$chamber_12gm_point_simple ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gm_point_simple , val$calc$sum$chamber_13gm_point_simple , val$calc$CI$chamber_13gm_point_simple , "val$calc$sum$chamber_13gm_point_simple ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgm_point_complex , val$calc$sum$chamber_Totalgm_point_complex , val$calc$CI$chamber_Totalgm_point_complex , "val$calc$sum$chamber_Totalgm_point_complex ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgm_to_use , val$calc$sum$chamber_Totalgm_to_use , val$calc$CI$chamber_Totalgm_to_use , "val$calc$sum$chamber_Totalgm_to_use ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_gm , val$calc$sum$chamber_Totalpc_using_gm , val$calc$CI$chamber_Totalpc_using_gm , "val$calc$sum$chamber_Totalpc_using_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12pc_using_gm , val$calc$sum$chamber_12pc_using_gm , val$calc$CI$chamber_12pc_using_gm , "val$calc$sum$chamber_12pc_using_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13pc_using_gm , val$calc$sum$chamber_13pc_using_gm , val$calc$CI$chamber_13pc_using_gm , "val$calc$sum$chamber_13pc_using_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_simple_Delta_for_gm , val$calc$sum$chamber_Totalpc_using_simple_Delta_for_gm , val$calc$CI$chamber_Totalpc_using_simple_Delta_for_gm , "val$calc$sum$chamber_Totalpc_using_simple_Delta_for_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_simple_Delta_for_modeling , val$calc$sum$chamber_Totalpc_using_simple_Delta_for_modeling , val$calc$CI$chamber_Totalpc_using_simple_Delta_for_modeling , "val$calc$sum$chamber_Totalpc_using_simple_Delta_for_modeling ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_complex_Delta_no_decarboxylation, val$calc$sum$chamber_Totalpc_using_complex_Delta_no_decarboxylation, val$calc$CI$chamber_Totalpc_using_complex_Delta_no_decarboxylation, "val$calc$sum$chamber_Totalpc_using_complex_Delta_no_decarboxylation", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_complex_Delta_full_model , val$calc$sum$chamber_Totalpc_using_complex_Delta_full_model , val$calc$CI$chamber_Totalpc_using_complex_Delta_full_model , "val$calc$sum$chamber_Totalpc_using_complex_Delta_full_model ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_to_use , val$calc$sum$chamber_Totalpc_to_use , val$calc$CI$chamber_Totalpc_to_use , "val$calc$sum$chamber_Totalpc_to_use ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCc , val$calc$sum$chamber_TotalCc , val$calc$CI$chamber_TotalCc , "val$calc$sum$chamber_TotalCc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Cc , val$calc$sum$chamber_12Cc , val$calc$CI$chamber_12Cc , "val$calc$sum$chamber_12Cc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Cc , val$calc$sum$chamber_13Cc , val$calc$CI$chamber_13Cc , "val$calc$sum$chamber_13Cc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
invisible(NULL);
### NULL
}
erikerhardt/isogasex documentation built on July 16, 2019, 5:25 a.m.
R Package Documentation
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#' plot each individual variable
#'
#' For every variable, creates plots using \code{\link{f_plot_CI_individuals}}.
#'
#' @param val xxxPARAMxxx
#' @param R_bootstrap xxxPARAMxxx
#' @param plot_format_list xxxPARAMxxx
#' @param output_fn_prefix xxxPARAMxxx
#'
#' @return NULL xxxRETURNxxx
#'
f_plot_CI_individuals_driver <-
function# plot each individual variable
###
(val
###
, R_bootstrap
###
, plot_format_list
###
, output_fn_prefix
###
)
{
##details<<
## For every variable, creates plots using \code{\link{f_plot_CI_individuals}}.
f_plot_CI_individuals(val$bs$TDL$conc12CO2 , val$sum$TDL$conc12CO2 , val$CI$TDL$conc12CO2 , "val$sum$TDL$conc12CO2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$conc13CO2 , val$sum$TDL$conc13CO2 , val$CI$TDL$conc13CO2 , "val$sum$TDL$conc13CO2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$TGApressure , val$sum$TDL$TGApressure , val$CI$TDL$TGApressure , "val$sum$TDL$TGApressure ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$MassFlow1 , val$sum$TDL$MassFlow1 , val$CI$TDL$MassFlow1 , "val$sum$TDL$MassFlow1 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$Pressure1 , val$sum$TDL$Pressure1 , val$CI$TDL$Pressure1 , "val$sum$TDL$Pressure1 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$MassFlow2 , val$sum$TDL$MassFlow2 , val$CI$TDL$MassFlow2 , "val$sum$TDL$MassFlow2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$Pressure2 , val$sum$TDL$Pressure2 , val$CI$TDL$Pressure2 , "val$sum$TDL$Pressure2 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$PressureProMan , val$sum$TDL$PressureProMan , val$CI$TDL$PressureProMan , "val$sum$TDL$PressureProMan ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_hi_12 , val$sum$TDL$interp_tank_hi_12 , val$CI$TDL$interp_tank_hi_12 , "val$sum$TDL$interp_tank_hi_12 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_hi_13 , val$sum$TDL$interp_tank_hi_13 , val$CI$TDL$interp_tank_hi_13 , "val$sum$TDL$interp_tank_hi_13 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_low_12 , val$sum$TDL$interp_tank_low_12 , val$CI$TDL$interp_tank_low_12 , "val$sum$TDL$interp_tank_low_12 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_tank_low_13 , val$sum$TDL$interp_tank_low_13 , val$CI$TDL$interp_tank_low_13 , "val$sum$TDL$interp_tank_low_13 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_reference_12, val$sum$TDL$interp_reference_12, val$CI$TDL$interp_reference_12, "val$sum$TDL$interp_reference_12", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$interp_reference_13, val$sum$TDL$interp_reference_13, val$CI$TDL$interp_reference_13, "val$sum$TDL$interp_reference_13", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$chamber_12 , val$sum$TDL$chamber_12 , val$CI$TDL$chamber_12 , "val$sum$TDL$chamber_12 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$TDL$chamber_13 , val$sum$TDL$chamber_13 , val$CI$TDL$chamber_13 , "val$sum$TDL$chamber_13 ", 1:val$sum$TDL$n, val$sum$TDL$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$FTime , val$sum$Licor$FTime , val$CI$Licor$FTime , "val$sum$Licor$FTime ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$A , val$sum$Licor$A , val$CI$Licor$A , "val$sum$Licor$A ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$gsc , val$sum$Licor$gsc , val$CI$Licor$gsc , "val$sum$Licor$gsc ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ci , val$sum$Licor$Ci , val$CI$Licor$Ci , "val$sum$Licor$Ci ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$E , val$sum$Licor$E , val$CI$Licor$E , "val$sum$Licor$E ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$VPD , val$sum$Licor$VPD , val$CI$Licor$VPD , "val$sum$Licor$VPD ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$La , val$sum$Licor$La , val$CI$Licor$La , "val$sum$Licor$La ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$StmRat , val$sum$Licor$StmRat , val$CI$Licor$StmRat , "val$sum$Licor$StmRat ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$gbw , val$sum$Licor$gbw , val$CI$Licor$gbw , "val$sum$Licor$gbw ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$temp_air , val$sum$Licor$temp_air , val$CI$Licor$temp_air , "val$sum$Licor$temp_air ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$temp_leaf , val$sum$Licor$temp_leaf , val$CI$Licor$temp_leaf , "val$sum$Licor$temp_leaf ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$temp_block, val$sum$Licor$temp_block, val$CI$Licor$temp_block, "val$sum$Licor$temp_block", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ce , val$sum$Licor$Ce , val$CI$Licor$Ce , "val$sum$Licor$Ce ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Co , val$sum$Licor$Co , val$CI$Licor$Co , "val$sum$Licor$Co ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xin , val$sum$Licor$xin , val$CI$Licor$xin , "val$sum$Licor$xin ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xout , val$sum$Licor$xout , val$CI$Licor$xout , "val$sum$Licor$xout ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$rh_ref , val$sum$Licor$rh_ref , val$CI$Licor$rh_ref , "val$sum$Licor$rh_ref ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$rh_sam , val$sum$Licor$rh_sam , val$CI$Licor$rh_sam , "val$sum$Licor$rh_sam ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$uin , val$sum$Licor$uin , val$CI$Licor$uin , "val$sum$Licor$uin ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$par_int , val$sum$Licor$par_int , val$CI$Licor$par_int , "val$sum$Licor$par_int ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$par_ext , val$sum$Licor$par_ext , val$CI$Licor$par_ext , "val$sum$Licor$par_ext ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Atm_press , val$sum$Licor$Atm_press , val$CI$Licor$Atm_press , "val$sum$Licor$Atm_press ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$CsMch , val$sum$Licor$CsMch , val$CI$Licor$CsMch , "val$sum$Licor$CsMch ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$HsMch , val$sum$Licor$HsMch , val$CI$Licor$HsMch , "val$sum$Licor$HsMch ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$StableF , val$sum$Licor$StableF , val$CI$Licor$StableF , "val$sum$Licor$StableF ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Status , val$sum$Licor$Status , val$CI$Licor$Status , "val$sum$Licor$Status ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$VpdA , val$sum$Licor$VpdA , val$CI$Licor$VpdA , "val$sum$Licor$VpdA ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ci_Ca , val$sum$Licor$Ci_Ca , val$CI$Licor$Ci_Ca , "val$sum$Licor$Ci_Ca ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$pi , val$sum$Licor$pi , val$CI$Licor$pi , "val$sum$Licor$pi ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$uc_20_mV , val$sum$Licor$uc_20_mV , val$CI$Licor$uc_20_mV , "val$sum$Licor$uc_20_mV ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$uc_21_mV , val$sum$Licor$uc_21_mV , val$CI$Licor$uc_21_mV , "val$sum$Licor$uc_21_mV ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$U_S , val$sum$Licor$U_S , val$CI$Licor$U_S , "val$sum$Licor$U_S ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Trans , val$sum$Licor$Trans , val$CI$Licor$Trans , "val$sum$Licor$Trans ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$CndCO2 , val$sum$Licor$CndCO2 , val$CI$Licor$CndCO2 , "val$sum$Licor$CndCO2 ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$Ref_mV , val$sum$Licor$Ref_mV , val$CI$Licor$Ref_mV , "val$sum$Licor$Ref_mV ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xTemp1 , val$sum$Licor$xTemp1 , val$CI$Licor$xTemp1 , "val$sum$Licor$xTemp1 ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$bs$Licor$xTemp2 , val$sum$Licor$xTemp2 , val$CI$Licor$xTemp2 , "val$sum$Licor$xTemp2 ", 1:val$sum$Licor$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$gain_12C , val$calc$sum$gain_12C , val$calc$CI$gain_12C , "val$calc$sum$gain_12C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$gain_13C , val$calc$sum$gain_13C , val$calc$CI$gain_13C , "val$calc$sum$gain_13C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$offset_12C , val$calc$sum$offset_12C , val$calc$CI$offset_12C , "val$calc$sum$offset_12C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$offset_13C , val$calc$sum$offset_13C , val$calc$CI$offset_13C , "val$calc$sum$offset_13C ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_12Ce , val$calc$sum$reference_12Ce , val$calc$CI$reference_12Ce , "val$calc$sum$reference_12Ce ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_13Ce , val$calc$sum$reference_13Ce , val$calc$CI$reference_13Ce , "val$calc$sum$reference_13Ce ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Co , val$calc$sum$chamber_12Co , val$calc$CI$chamber_12Co , "val$calc$sum$chamber_12Co ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Co , val$calc$sum$chamber_13Co , val$calc$CI$chamber_13Co , "val$calc$sum$chamber_13Co ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_TotalCe , val$calc$sum$reference_TotalCe , val$calc$CI$reference_TotalCe , "val$calc$sum$reference_TotalCe ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCo , val$calc$sum$chamber_TotalCo , val$calc$CI$chamber_TotalCo , "val$calc$sum$chamber_TotalCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_Total_diff_CeCo , val$calc$sum$chamber_reference_Total_diff_CeCo , val$calc$CI$chamber_reference_Total_diff_CeCo , "val$calc$sum$chamber_reference_Total_diff_CeCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_12_diff_CeCo , val$calc$sum$chamber_reference_12_diff_CeCo , val$calc$CI$chamber_reference_12_diff_CeCo , "val$calc$sum$chamber_reference_12_diff_CeCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_13_diff_CeCo , val$calc$sum$chamber_reference_13_diff_CeCo , val$calc$CI$chamber_reference_13_diff_CeCo , "val$calc$sum$chamber_reference_13_diff_CeCo ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$xi , val$calc$sum$xi , val$calc$CI$xi , "val$calc$sum$xi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
# f_plot_CI_individuals(val$calc$bs$flow_adjusted , val$calc$sum$flow_adjusted , val$calc$CI$flow_adjusted , "val$calc$sum$flow_adjusted ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix) # 9/5/2012
f_plot_CI_individuals(val$calc$bs$TDL_A_photosynthesis , val$calc$sum$TDL_A_photosynthesis , val$calc$CI$TDL_A_photosynthesis , "val$calc$sum$TDL_A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$TDL_12A_photosynthesis , val$calc$sum$TDL_12A_photosynthesis , val$calc$CI$TDL_12A_photosynthesis , "val$calc$sum$TDL_12A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$TDL_13A_photosynthesis , val$calc$sum$TDL_13A_photosynthesis , val$calc$CI$TDL_13A_photosynthesis , "val$calc$sum$TDL_13A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Licor_A_photosynthesis , val$calc$sum$Licor_A_photosynthesis , val$calc$CI$Licor_A_photosynthesis , "val$calc$sum$Licor_A_photosynthesis ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_from_ratios_in_out , val$calc$sum$Delta_from_ratios_in_out , val$calc$CI$Delta_from_ratios_in_out , "val$calc$sum$Delta_from_ratios_in_out ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_from_A_ratio , val$calc$sum$Delta_from_A_ratio , val$calc$CI$Delta_from_A_ratio , "val$calc$sum$Delta_from_A_ratio ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$VPD , val$calc$sum$VPD , val$calc$CI$VPD , "val$calc$sum$VPD ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$E_transpiration , val$calc$sum$E_transpiration , val$calc$CI$E_transpiration , "val$calc$sum$E_transpiration ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$leaf_temp , val$calc$sum$leaf_temp , val$calc$CI$leaf_temp , "val$calc$sum$leaf_temp ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$air_temp , val$calc$sum$air_temp , val$calc$CI$air_temp , "val$calc$sum$air_temp ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$light_in , val$calc$sum$light_in , val$calc$CI$light_in , "val$calc$sum$light_in ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$light_out , val$calc$sum$light_out , val$calc$CI$light_out , "val$calc$sum$light_out ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$reference_delta_e , val$calc$sum$reference_delta_e , val$calc$CI$reference_delta_e , "val$calc$sum$reference_delta_e ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_delta_o , val$calc$sum$chamber_delta_o , val$calc$CI$chamber_delta_o , "val$calc$sum$chamber_delta_o ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_reference_delta_diff_CoCe , val$calc$sum$chamber_reference_delta_diff_CoCe , val$calc$CI$chamber_reference_delta_diff_CoCe , "val$calc$sum$chamber_reference_delta_diff_CoCe ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_obs , val$calc$sum$Delta_obs , val$calc$CI$Delta_obs , "val$calc$sum$Delta_obs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$Delta_obs_permil , val$calc$sum$Delta_obs_permil , val$calc$CI$Delta_obs_permil , "val$calc$sum$Delta_obs_permil ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$delta_13C_Assim , val$calc$sum$delta_13C_Assim , val$calc$CI$delta_13C_Assim , "val$calc$sum$delta_13C_Assim ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$p , val$calc$sum$p , val$calc$CI$p , "val$calc$sum$p ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$delta_13C_Resp , val$calc$sum$delta_13C_Resp , val$calc$CI$delta_13C_Resp , "val$calc$sum$delta_13C_Resp ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCa , val$calc$sum$chamber_TotalCa , val$calc$CI$chamber_TotalCa , "val$calc$sum$chamber_TotalCa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Ca , val$calc$sum$chamber_12Ca , val$calc$CI$chamber_12Ca , "val$calc$sum$chamber_12Ca ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Ca , val$calc$sum$chamber_13Ca , val$calc$CI$chamber_13Ca , "val$calc$sum$chamber_13Ca ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCs , val$calc$sum$chamber_TotalCs , val$calc$CI$chamber_TotalCs , "val$calc$sum$chamber_TotalCs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Cs , val$calc$sum$chamber_12Cs , val$calc$CI$chamber_12Cs , "val$calc$sum$chamber_12Cs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Cs , val$calc$sum$chamber_13Cs , val$calc$CI$chamber_13Cs , "val$calc$sum$chamber_13Cs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpa , val$calc$sum$chamber_Totalpa , val$calc$CI$chamber_Totalpa , "val$calc$sum$chamber_Totalpa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12pa , val$calc$sum$chamber_12pa , val$calc$CI$chamber_12pa , "val$calc$sum$chamber_12pa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13pa , val$calc$sum$chamber_13pa , val$calc$CI$chamber_13pa , "val$calc$sum$chamber_13pa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalps , val$calc$sum$chamber_Totalps , val$calc$CI$chamber_Totalps , "val$calc$sum$chamber_Totalps ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12ps , val$calc$sum$chamber_12ps , val$calc$CI$chamber_12ps , "val$calc$sum$chamber_12ps ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13ps , val$calc$sum$chamber_13ps , val$calc$CI$chamber_13ps , "val$calc$sum$chamber_13ps ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgbw , val$calc$sum$chamber_Totalgbw , val$calc$CI$chamber_Totalgbw , "val$calc$sum$chamber_Totalgbw ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgbc , val$calc$sum$chamber_Totalgbc , val$calc$CI$chamber_Totalgbc , "val$calc$sum$chamber_Totalgbc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gbc , val$calc$sum$chamber_12gbc , val$calc$CI$chamber_12gbc , "val$calc$sum$chamber_12gbc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gbc , val$calc$sum$chamber_13gbc , val$calc$CI$chamber_13gbc , "val$calc$sum$chamber_13gbc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgsw , val$calc$sum$chamber_Totalgsw , val$calc$CI$chamber_Totalgsw , "val$calc$sum$chamber_Totalgsw ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgsc , val$calc$sum$chamber_Totalgsc , val$calc$CI$chamber_Totalgsc , "val$calc$sum$chamber_Totalgsc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gsc , val$calc$sum$chamber_12gsc , val$calc$CI$chamber_12gsc , "val$calc$sum$chamber_12gsc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gsc , val$calc$sum$chamber_13gsc , val$calc$CI$chamber_13gsc , "val$calc$sum$chamber_13gsc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgtc , val$calc$sum$chamber_Totalgtc , val$calc$CI$chamber_Totalgtc , "val$calc$sum$chamber_Totalgtc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gtc , val$calc$sum$chamber_12gtc , val$calc$CI$chamber_12gtc , "val$calc$sum$chamber_12gtc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gtc , val$calc$sum$chamber_13gtc , val$calc$CI$chamber_13gtc , "val$calc$sum$chamber_13gtc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCi , val$calc$sum$chamber_TotalCi , val$calc$CI$chamber_TotalCi , "val$calc$sum$chamber_TotalCi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Ci , val$calc$sum$chamber_12Ci , val$calc$CI$chamber_12Ci , "val$calc$sum$chamber_12Ci ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Ci , val$calc$sum$chamber_13Ci , val$calc$CI$chamber_13Ci , "val$calc$sum$chamber_13Ci ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpi , val$calc$sum$chamber_Totalpi , val$calc$CI$chamber_Totalpi , "val$calc$sum$chamber_Totalpi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12pi , val$calc$sum$chamber_12pi , val$calc$CI$chamber_12pi , "val$calc$sum$chamber_12pi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13pi , val$calc$sum$chamber_13pi , val$calc$CI$chamber_13pi , "val$calc$sum$chamber_13pi ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpi_pa , val$calc$sum$chamber_Totalpi_pa , val$calc$CI$chamber_Totalpi_pa , "val$calc$sum$chamber_Totalpi_pa ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_simple_for_gm , val$calc$sum$chamber_Delta_i_simple_for_gm , val$calc$CI$chamber_Delta_i_simple_for_gm , "val$calc$sum$chamber_Delta_i_simple_for_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_simple_for_modeling , val$calc$sum$chamber_Delta_i_simple_for_modeling , val$calc$CI$chamber_Delta_i_simple_for_modeling , "val$calc$sum$chamber_Delta_i_simple_for_modeling ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_complex_for_gm , val$calc$sum$chamber_Delta_i_complex_for_gm , val$calc$CI$chamber_Delta_i_complex_for_gm , "val$calc$sum$chamber_Delta_i_complex_for_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_simple_for_gm_Delta_obs , val$calc$sum$chamber_Delta_i_simple_for_gm_Delta_obs , val$calc$CI$chamber_Delta_i_simple_for_gm_Delta_obs , "val$calc$sum$chamber_Delta_i_simple_for_gm_Delta_obs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Delta_i_complex_for_gm_Delta_obs , val$calc$sum$chamber_Delta_i_complex_for_gm_Delta_obs , val$calc$CI$chamber_Delta_i_complex_for_gm_Delta_obs , "val$calc$sum$chamber_Delta_i_complex_for_gm_Delta_obs ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgm_point_simple , val$calc$sum$chamber_Totalgm_point_simple , val$calc$CI$chamber_Totalgm_point_simple , "val$calc$sum$chamber_Totalgm_point_simple ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12gm_point_simple , val$calc$sum$chamber_12gm_point_simple , val$calc$CI$chamber_12gm_point_simple , "val$calc$sum$chamber_12gm_point_simple ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13gm_point_simple , val$calc$sum$chamber_13gm_point_simple , val$calc$CI$chamber_13gm_point_simple , "val$calc$sum$chamber_13gm_point_simple ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgm_point_complex , val$calc$sum$chamber_Totalgm_point_complex , val$calc$CI$chamber_Totalgm_point_complex , "val$calc$sum$chamber_Totalgm_point_complex ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalgm_to_use , val$calc$sum$chamber_Totalgm_to_use , val$calc$CI$chamber_Totalgm_to_use , "val$calc$sum$chamber_Totalgm_to_use ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_gm , val$calc$sum$chamber_Totalpc_using_gm , val$calc$CI$chamber_Totalpc_using_gm , "val$calc$sum$chamber_Totalpc_using_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12pc_using_gm , val$calc$sum$chamber_12pc_using_gm , val$calc$CI$chamber_12pc_using_gm , "val$calc$sum$chamber_12pc_using_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13pc_using_gm , val$calc$sum$chamber_13pc_using_gm , val$calc$CI$chamber_13pc_using_gm , "val$calc$sum$chamber_13pc_using_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_simple_Delta_for_gm , val$calc$sum$chamber_Totalpc_using_simple_Delta_for_gm , val$calc$CI$chamber_Totalpc_using_simple_Delta_for_gm , "val$calc$sum$chamber_Totalpc_using_simple_Delta_for_gm ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_simple_Delta_for_modeling , val$calc$sum$chamber_Totalpc_using_simple_Delta_for_modeling , val$calc$CI$chamber_Totalpc_using_simple_Delta_for_modeling , "val$calc$sum$chamber_Totalpc_using_simple_Delta_for_modeling ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_complex_Delta_no_decarboxylation, val$calc$sum$chamber_Totalpc_using_complex_Delta_no_decarboxylation, val$calc$CI$chamber_Totalpc_using_complex_Delta_no_decarboxylation, "val$calc$sum$chamber_Totalpc_using_complex_Delta_no_decarboxylation", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_using_complex_Delta_full_model , val$calc$sum$chamber_Totalpc_using_complex_Delta_full_model , val$calc$CI$chamber_Totalpc_using_complex_Delta_full_model , "val$calc$sum$chamber_Totalpc_using_complex_Delta_full_model ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_Totalpc_to_use , val$calc$sum$chamber_Totalpc_to_use , val$calc$CI$chamber_Totalpc_to_use , "val$calc$sum$chamber_Totalpc_to_use ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_TotalCc , val$calc$sum$chamber_TotalCc , val$calc$CI$chamber_TotalCc , "val$calc$sum$chamber_TotalCc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_12Cc , val$calc$sum$chamber_12Cc , val$calc$CI$chamber_12Cc , "val$calc$sum$chamber_12Cc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
f_plot_CI_individuals(val$calc$bs$chamber_13Cc , val$calc$sum$chamber_13Cc , val$calc$CI$chamber_13Cc , "val$calc$sum$chamber_13Cc ", 1:val$sum$TDL$n, val$sum$Licor$n, R_bootstrap, plot_format_list, output_fn_prefix)
invisible(NULL);
### NULL
}
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