R/plot_Delta_i.R

In erikerhardt/isogasex: Isotopic gas exchange using TDL and Licor input. Updated version of package tdllicor

#' Plot Delta_i, predicted discrimination
#'
#' Plots the input variables.
#'
#' @param chamber_Delta_i_simple_for_gm xxxPARAMxxx
#' @param chamber_Delta_i_simple_for_modeling xxxPARAMxxx
#' @param chamber_Delta_i_complex_for_gm xxxPARAMxxx
#' @param chamber_Delta_i_simple_for_gm_Delta_obs xxxPARAMxxx
#' @param chamber_Delta_i_complex_for_gm_Delta_obs xxxPARAMxxx
#' @param x_time xxxPARAMxxx
#' @param plot_format_list xxxPARAMxxx
#' @param output_fn_prefix xxxPARAMxxx
#'
#' @return NULL xxxRETURNxxx
#' @importFrom graphics par
#'
plot_Delta_i <-
function# Plot Delta_i, predicted discrimination
###
(chamber_Delta_i_simple_for_gm
###
, chamber_Delta_i_simple_for_modeling
###
, chamber_Delta_i_complex_for_gm
###
, chamber_Delta_i_simple_for_gm_Delta_obs
###
, chamber_Delta_i_complex_for_gm_Delta_obs
###
, x_time
###
, plot_format_list
###
, output_fn_prefix
###
)
{
  ##details<<
  ## Plots the input variables.

  for (i_plot in plot_format_list)
  {
    plot_filename <- "plot_Delta_i_predicted_discrimination";
    s_plot_settings_begin_end(output_fn_prefix, plot_filename, plot_mode = "begin", plot_format = i_plot);

    graphics::par(mfrow=c(5,1), mar=c(4,4,2,2), oma=c(1,1,1,1));  # mar allows the histograms to touch top-bottom c(bot,lef,top,rig)
    plot_not_na(x_time, chamber_Delta_i_simple_for_gm           , pch=20, type="l", ylab="", main="Delta_i simple for gm");
    plot_not_na(x_time, chamber_Delta_i_simple_for_modeling     , pch=20, type="l", ylab="", main="Delta_i simple for modeling");
    plot_not_na(x_time, chamber_Delta_i_complex_for_gm          , pch=20, type="l", ylab="", main="Delta_i complex for gm");
    plot_not_na(x_time, chamber_Delta_i_simple_for_gm_Delta_obs , pch=20, type="l", ylab="", main="difference of Delta_i simple for gm and Delta_obs from TDL");
    plot_not_na(x_time, chamber_Delta_i_complex_for_gm_Delta_obs, pch=20, type="l", ylab="", main="difference of Delta_i complex for gm and Delta_obs from TDL");

    #axis(3); axis(4); # add axis labels to top and right sides
    s_plot_settings_begin_end(output_fn_prefix, plot_filename, plot_mode = "end", i_plot);
  } # plotting loop

  invisible(NULL);
  ### NULL
}