API for erikjskie/ensemblemerge
Integrates existing sc-RNAseq integration methods into a single package
| Global functions | |
|---|---|
| .check_dependences | Source code |
| .check_method | Source code |
| .new_object | Source code |
| BBKNNMerge-class | Man page |
| BaseMerge-class | Man page |
| BasePreprocess-class | Man page |
| EnsembleMerge-class | Man page |
| FastMNNMerge-class | Man page |
| HarmonyMerge-class | Man page |
| LigerMerge-class | Man page |
| Merge | Man page |
| Merge,Seurat,BBKNNMerge-method | Man page |
| Merge,Seurat,FastMNNMerge-method | Man page |
| Merge,Seurat,HarmonyMerge-method | Man page |
| Merge,Seurat,LigerMerge-method | Man page |
| Merge,Seurat,Params-method | Man page |
| Merge,Seurat,ScanoramaMerge-method | Man page |
| Merge,Seurat,SeuratMerge-method | Man page |
| Merge,Seurat,UncorrectedMerge-method | Man page |
| Merge,Seurat,scVIMerge-method | Man page |
| Merge,SeuratList,SeuratMerge-method | Man page |
| Merge,SummarizedExperiment,BaseMerge-method | Man page |
| Merge,SummarizedExperiment,Params-method | Man page |
| MethodList-class | Man page |
| Preprocess | Man page |
| Preprocess,Seurat,SeuratPreprocess,BaseMerge-method | Man page |
| PythonPackage-class | Man page |
| RPackage-class | Man page |
| ScanoramaMerge-class | Man page |
| ScanpyPreprocess-class | Man page |
| SeuratList-class | Man page |
| SeuratMerge-class | Man page |
| SeuratPreprocess-class | Man page |
| UncorrectedMerge-class | Man page |
| check_package | Source code |
| ensemble | Man page |
| ensemble,Seurat,EnsembleMerge-method | Man page |
| pbmc | Man page |
| run_BBKNN | Man page Source code |
| run_Harmony | Man page Source code |
| run_Liger | Man page Source code |
| run_Scanorama | Man page Source code |
| run_Seurat | Man page Source code |
| run_Uncorrected | Man page Source code |
| run_fastMNN | Man page Source code |
| run_scVI | Man page Source code |
| scVIMerge-class | Man page |
| setParams | Man page Source code |
| show,BBKNNMerge-method | Man page |
| show,BaseMerge-method | Man page |
| show,BasePreprocess-method | Man page |
| show,EnsembleMerge-method | Man page |
| show,FastMNNMerge-method | Man page |
| show,HarmonyMerge-method | Man page |
| show,LigerMerge-method | Man page |
| show,Params-method | Man page |
| show,SeuratMerge-method | Man page |
| show,SeuratPreprocess-method | Man page |
| valid | Man page |
| valid,Seurat,BaseMerge-method | Man page |
| valid,Seurat,BasePreprocess-method | Man page |
| valid,Seurat,EnsembleMerge-method | Man page |
