BasePreprocess-class: The BasePreprocess class
In erikjskie/ensemblemerge: Integrates existing sc-RNAseq integration methods into a single package
BasePreprocess-class R Documentation
The BasePreprocess class
Description
The BasePreprocess class
Slots
min_cellsthe minimum number of cells that a gene should be expressed.
min_genesthe minimum number of genes that a cell should express.
norm_datawhether or not normalizing the data
scalingwhether or not scaling the data
norm_methodthe normalization method
scale_factorthe scaling factor
numHVGnumber of highly variable genes
raw_assaythe raw assay field in a Seurat object
batchcharacter name of batch in dataset metadata
erikjskie/ensemblemerge documentation built on March 19, 2022, 3 p.m.
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| BasePreprocess-class | R Documentation |
The BasePreprocess class
Description
The BasePreprocess class
Slots
min_cellsthe minimum number of cells that a gene should be expressed.
min_genesthe minimum number of genes that a cell should express.
norm_datawhether or not normalizing the data
scalingwhether or not scaling the data
norm_methodthe normalization method
scale_factorthe scaling factor
numHVGnumber of highly variable genes
raw_assaythe raw assay field in a Seurat object
batchcharacter name of batch in dataset metadata
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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