Files in erikjskie/ensemblemerge

Integrates existing sc-RNAseq integration methods into a single package

R/AllClasses.R R/AllGenerics.R R/Merge.R R/Preprocess.r R/data.R R/ensemble.r R/runBBKNN.R R/runHarmony.R R/runLiger.R R/runMNN.R R/runSCVI.R R/runScanorama.R R/runSeurat.R R/runUncorrected.R R/setParams.R R/show.r R/valid.r README.md man/BBKNNMerge-class.Rd man/BaseMerge-class.Rd man/BasePreprocess-class.Rd man/EnsembleMerge-class.Rd man/FastMNNMerge-class.Rd man/HarmonyMerge-class.Rd man/LigerMerge-class.Rd man/Merge-Seurat-BBKNNMerge-method.Rd man/Merge-Seurat-FastMNNMerge-method.Rd man/Merge-Seurat-HarmonyMerge-method.Rd man/Merge-Seurat-LigerMerge-method.Rd man/Merge-Seurat-Params-method.Rd man/Merge-Seurat-ScanoramaMerge-method.Rd man/Merge-Seurat-SeuratMerge-method.Rd man/Merge-Seurat-UncorrectedMerge-method.Rd man/Merge-Seurat-scVIMerge-method.Rd man/Merge-SeuratList-SeuratMerge-method.Rd man/Merge-SummarizedExperiment-BaseMerge-method.Rd man/Merge-SummarizedExperiment-Params-method.Rd man/Merge.Rd man/MethodList-class.Rd man/Preprocess-Seurat-SeuratPreprocess-BaseMerge-method.Rd man/Preprocess.Rd man/PythonPackage-class.Rd man/RPackage-class.Rd man/ScanoramaMerge-class.Rd man/ScanpyPreprocess-class.Rd man/SeuratList-class.Rd man/SeuratMerge-class.Rd man/SeuratPreprocess-class.Rd man/UncorrectedMerge-class.Rd man/ensemble-Seurat-EnsembleMerge-method.Rd man/ensemble.Rd man/pbmc.Rd man/run_BBKNN.Rd man/run_Harmony.Rd man/run_Liger.Rd man/run_Scanorama.Rd man/run_Seurat.Rd man/run_Uncorrected.Rd man/run_fastMNN.Rd man/run_scVI.Rd man/scVIMerge-class.Rd man/setParams.Rd man/show-BBKNNMerge-method.Rd man/show-BaseMerge-method.Rd man/show-BasePreprocess-method.Rd man/show-EnsembleMerge-method.Rd man/show-FastMNNMerge-method.Rd man/show-HarmonyMerge-method.Rd man/show-LigerMerge-method.Rd man/show-Params-method.Rd man/show-SeuratMerge-method.Rd man/show-SeuratPreprocess-method.Rd man/valid-Seurat-BaseMerge-method.Rd man/valid-Seurat-BasePreprocess-method.Rd man/valid-Seurat-EnsembleMerge-method.Rd man/valid.Rd